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[DOC] update
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@nservant
nservant committed Jul 18, 2024
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Expand Up @@ -623,7 +623,12 @@ Several resolutions can be specified (comma-separeted). Default: '250000'

### Compartment calling

Call open/close compartments for each chromosome, using the `cooltools` command.
Call open/close compartments for each chromosome, using the `cooltools` or `calder2` tools.

#### `--compartments_caller`

Compartments calling can be performed with either `cooltools`
or `calder2`. Multiple choices are possible (comma-separated).

#### `--res_compartments`

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