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Update publishDir of bakta #362

Merged
merged 1 commit into from
Apr 24, 2024
Merged

Update publishDir of bakta #362

merged 1 commit into from
Apr 24, 2024

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jasmezz
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@jasmezz jasmezz commented Apr 24, 2024

Save annotation output in subdirectories per sample instead of everything in the same directory.

Closes #357

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/funcscan branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,singularity --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Apr 24, 2024 •
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nf-core lint overall result: Passed ✅

Posted for pipeline commit 020f238

+| ✅ 236 tests passed       |+

✅ Tests passed:

Run details

  • nf-core/tools version 2.13.1
  • Run at 2024-04-24 09:37:18

@jasmezz jasmezz requested a review from a team April 24, 2024 09:38
@jfy133 jfy133 merged commit 5de3805 into dev Apr 24, 2024
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@jfy133 jfy133 deleted the fix-bakta-publishdir branch April 24, 2024 10:46
@jasmezz jasmezz mentioned this pull request Apr 24, 2024
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@jasmezz jasmezz mentioned this pull request Jul 29, 2024
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@jfy133 jfy133 jfy133 approved these changes

@Darcy220606 Darcy220606 Darcy220606 approved these changes

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@jasmezz @jfy133 @Darcy220606