chore: release 1.1.0 #89
Conversation
chore: bump dev version
fix: output bai from ALIGN_CONSENSUS_BAM
fix: file glob
Template update for nf-core/tools version 3.0.1 Template update for nf-core/tools version 3.0.2
chore: template update for nf-core/tools version 3.0.2
chore: raise minimum version
fix: lower config min version
fix: align versioning across tests and config
chore: prepare for release
fix: conda environments
fix: limit downloads
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Although I see @MatthiasZepper is already involved in looking at that. |
Yes, the botched Seqera Containers roll-out is keeping me up on my toes. But the error here was nicely troubleshooted, pinpointed and reported by @znorgaard, so I could fix it. The download will work, once this PR is merged to tools and already does, when the action from the dev branch is used instead the version from master. I do really not know how to proceed, if one doesn't want to wait for the tools update. I think, in this case, it would be fine to merge with a failing test? Otherwise, it is a hen and an egg problem: To merge |
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Happy to merge with the failed test then, if it'll be fixed anyway. Although that'll require someone with more permissions than me. |
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@znorgaard: Happy fastquorum releasing! |
| ch_multiqc_config = Channel.fromPath( | ||
| "$projectDir/assets/multiqc_config.yml", checkIfExists: true) | ||
| ch_multiqc_custom_config = params.multiqc_config ? | ||
| Channel.fromPath(params.multiqc_config, checkIfExists: true) : | ||
| Channel.empty() | ||
| ch_multiqc_logo = params.multiqc_logo ? | ||
| Channel.fromPath(params.multiqc_logo, checkIfExists: true) : | ||
| Channel.empty() | ||
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| summary_params = paramsSummaryMap( | ||
| workflow, parameters_schema: "nextflow_schema.json") | ||
| ch_workflow_summary = Channel.value(paramsSummaryMultiqc(summary_params)) | ||
| ch_multiqc_files = ch_multiqc_files.mix( | ||
| ch_workflow_summary.collectFile(name: 'workflow_summary_mqc.yaml')) | ||
| ch_multiqc_custom_methods_description = params.multiqc_methods_description ? | ||
| file(params.multiqc_methods_description, checkIfExists: true) : | ||
| file("$projectDir/assets/methods_description_template.yml", checkIfExists: true) | ||
| ch_methods_description = Channel.value( | ||
| methodsDescriptionText(ch_multiqc_custom_methods_description)) | ||
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| ch_multiqc_files = ch_multiqc_files.mix(ch_collated_versions) | ||
| ch_multiqc_files = ch_multiqc_files.mix( | ||
| ch_methods_description.collectFile( | ||
| name: 'methods_description_mqc.yaml', | ||
| sort: true | ||
| ) | ||
| ) |
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The syntax formatting here makes this an especially difficult section to read/review.
Could we format this?
CHANGELOG.md
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| | samtools/faidx | 04fbbc7 | b13f07b | | ||
| | samtools/merge | 04fbbc7 | b13f07b | | ||
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| - [PR #87](https://github.com/nf-core/fastquorum/pull/87) - Raise minimum version to 24.04.2 |
There was a problem hiding this comment.
| - [PR #87](https://github.com/nf-core/fastquorum/pull/87) - Raise minimum version to 24.04.2 | |
| - [PR #87](https://github.com/nf-core/fastquorum/pull/87) - Raise minimum Nextflow version to 24.04.2 |
chore: set release date
chore: version bump
Update nf-core components to latest versions
PR checklist
nf-core lint).nf-test test main.nf.test -profile test,docker).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).