Merge pull request #80 from nf-core/zn_output_bai

fix: file glob
nf-core · Oct 5, 2024 · a89b4cf · a89b4cf
2 parents 811b32c + 48f6d61
commit a89b4cf
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -7,7 +7,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Enhancements & fixes
 
-- [PR #79](https://github.com/nf-core/fastquorum/pull/79) - Publish aligned consensus bai file
+- [PR #79](https://github.com/nf-core/fastquorum/pull/79) and [PR #80](https://github.com/nf-core/fastquorum/pull/90) - Publish aligned consensus bai file
 
 ## [[1.0.1]](https://github.com/nf-core/fastquorum/releases/tag/1.0.1) -- 2024-09-10
 

diff --git a/conf/modules.config b/conf/modules.config
@@ -68,7 +68,7 @@ process {
         publishDir = [
             path: { "${params.outdir}/preprocessing/align_raw_bam/${meta.id}" },
             mode: params.publish_dir_mode,
-            pattern: '*.mapped.{bam, bam.bai}'
+            pattern: '*.mapped.{bam,bam.bai}'
         ]
     }
 
@@ -129,7 +129,7 @@ process {
         publishDir = [
             path: { "${params.outdir}/consensus_filtering/filtered/${meta.id}" },
             mode: params.publish_dir_mode,
-            pattern: '*.cons.filtered.{bam, bam.bai}'
+            pattern: '*.cons.filtered.{bam,bam.bai}'
         ]
     }
 
@@ -141,7 +141,7 @@ process {
         publishDir = [
             path: { "${params.outdir}/filtering/align_consensus_bam/${meta.id}" },
             mode: params.publish_dir_mode,
-            pattern: '*.mapped.{bam, bam.bai}'
+            pattern: '*.mapped.{bam,bam.bai}'
         ]
     }