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Is your feature request related to a problem? Please describe.
Base config is quite long at the moment with default resource settings for every process.
@maxulysse suggested to generalise the resources using labels.
i.e. in the base_config set the following
withLabel:cpus_1 { cpus = {check_resource(1)} }
(https://github.com/nf-core/sarek/blob/4bdff8eed3e4bf1a4393b226d2e87f09c2346d35/conf/base.config#L22-L24)
And then in the main, add the label:
process FastQCFQ { label 'cpus_2' tag {idPatient + "-" + idRun}
Processes that still require very special resources (e.g. MALT) can still use the withName process selector
withName
The text was updated successfully, but these errors were encountered:
jfy133
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Is your feature request related to a problem? Please describe.
Base config is quite long at the moment with default resource settings for every process.
@maxulysse suggested to generalise the resources using labels.
i.e. in the base_config set the following
(https://github.com/nf-core/sarek/blob/4bdff8eed3e4bf1a4393b226d2e87f09c2346d35/conf/base.config#L22-L24)
And then in the main, add the label:
Processes that still require very special resources (e.g. MALT) can still use the
withName
process selectorThe text was updated successfully, but these errors were encountered: