Integrate subworkflows into pipeline #1335

Job	Run time
24.04.2 \| test \| docker	2m 43s
24.04.2 \| nogtf \| docker	2m 29s
24.04.2 \| affy \| docker	2m 39s
24.04.2 \| maxquant \| docker	2m 42s
24.04.2 \| soft \| docker	2m 42s
24.04.2 \| rnaseq_limma \| docker	2m 28s
latest-stable \| test \| docker	2m 34s
latest-stable \| nogtf \| docker	2m 40s
latest-stable \| affy \| docker	2m 43s
latest-stable \| maxquant \| docker	2m 31s
latest-stable \| soft \| docker	2m 25s
latest-stable \| rnaseq_limma \| docker	2m 41s
	31m 17s

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