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Fix test dataset base path usage
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nictru committed Oct 16, 2024
1 parent f01f1b2 commit b9c3868
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions conf/test.config
Original file line number Diff line number Diff line change
Expand Up @@ -28,12 +28,12 @@ params {
max_time = 6.h

// Test input data
input = "${params.pipelines_testdata_base_path}/samples.csv"
fasta = "${params.pipelines_testdata_base_path}/reference/chrI.fa"
gtf = "${params.pipelines_testdata_base_path}/reference/chrI.gtf"
mature = "${params.pipelines_testdata_base_path}/reference/mature.fa"
input = "${params.pipelines_testdata_base_path}circrna/samples.csv"
fasta = "${params.pipelines_testdata_base_path}circrna/reference/chrI.fa"
gtf = "${params.pipelines_testdata_base_path}circrna/reference/chrI.gtf"
mature = "${params.pipelines_testdata_base_path}circrna/reference/mature.fa"
tools = "circexplorer2"
phenotype = "${params.pipelines_testdata_base_path}/phenotype.csv"
phenotype = "${params.pipelines_testdata_base_path}circrna/phenotype.csv"
skip_trimming = false
outdir = "results/"
bsj_reads = 2
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