removed debugging statements

nf-core · Aug 1, 2024 · 74a243a · 74a243a
1 parent 9e1717e
commit 74a243a
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Showing 2 changed files with 2 additions and 4 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -342,8 +342,8 @@ process {
     }
 
     withName: '.*:FIND_CIRC:UNIFY' {
-        // Keep only rows with UNAMBIGUOUS_BP and ANCHOR_UNIQUE in $18
-        ext.args = "-v FS='\\t' -v OFS='\\t' '{ if (\$18 ~ /UNAMBIGUOUS_BP/ && \$18 ~ /ANCHOR_UNIQUE/) { print \$1, \$2, \$3, \$1 \":\" \$2 \"-\" \$3 \":\" \$6, \$5, \$6 } }'"
+        // Keep only rows with CIRCULAR, UNAMBIGUOUS_BP and ANCHOR_UNIQUE in $18
+        ext.args = "-v FS='\\t' -v OFS='\\t' '{ if (\$18 ~ /CIRCULAR/ && \$18 ~ /UNAMBIGUOUS_BP/ && \$18 ~ /ANCHOR_UNIQUE/) { print \$1, \$2, \$3, \$1 \":\" \$2 \"-\" \$3 \":\" \$6, \$5, \$6 } }'"
         ext.suffix = "find_circ.bed"
         publishDir = [
             path: { "${params.outdir}/circrna_discovery/find_circ/${meta.id}" },

diff --git a/subworkflows/local/benchmarking.nf b/subworkflows/local/benchmarking.nf
@@ -34,8 +34,6 @@ workflow BENCHMARKING {
                             benchmarking: meta.benchmarking], bed]}
         .groupTuple()
 
-    ch_all.view {"all: $it"}
-
     SORT(ch_all)
 
     BEDTOOLS_MERGE(SORT.out.sorted).bed.branch{ meta, bed ->