update bowtie2 snap

nf-core · Jun 26, 2023 · b764ac4 · b764ac4
1 parent 63d822a
commit b764ac4
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Showing 2 changed files with 6 additions and 17 deletions.
diff --git a/tests/pipeline/test_aligner_bowtie2.nf.test b/tests/pipeline/test_aligner_bowtie2.nf.test
@@ -18,12 +18,12 @@ nextflow_pipeline {
             assertAll(
                 { assert workflow.success },
                 { assert snapshot(UTILS.removeNextflowVersion("$outputDir")).match("software_versions") },
-                { assert snapshot(path("$outputDir/bowtie2/mergedLibrary/SPT5_INPUT_REP1.mLb.clN.sorted.bam"),
-                                path("$outputDir/bowtie2/mergedLibrary/SPT5_INPUT_REP2.mLb.clN.sorted.bam"),
-                                path("$outputDir/bowtie2/mergedLibrary/SPT5_T0_REP1.mLb.clN.sorted.bam"),
-                                path("$outputDir/bowtie2/mergedLibrary/SPT5_T0_REP2.mLb.clN.sorted.bam"),
-                                path("$outputDir/bowtie2/mergedLibrary/SPT5_T15_REP1.mLb.clN.sorted.bam"),
-                                path("$outputDir/bowtie2/mergedLibrary/SPT5_T15_REP2.mLb.clN.sorted.bam")).match("bwa/mergedLibrary/") },
+                { assert new File("$outputDir/bowtie2/mergedLibrary/SPT5_INPUT_REP1.mLb.clN.sorted.bam").exists() },
+                { assert new File("$outputDir/bowtie2/mergedLibrary/SPT5_INPUT_REP2.mLb.clN.sorted.bam").exists() },
+                { assert new File("$outputDir/bowtie2/mergedLibrary/SPT5_T0_REP1.mLb.clN.sorted.bam").exists() },
+                { assert new File("$outputDir/bowtie2/mergedLibrary/SPT5_T0_REP2.mLb.clN.sorted.bam").exists() },
+                { assert new File("$outputDir/bowtie2/mergedLibrary/SPT5_T15_REP1.mLb.clN.sorted.bam").exists() },
+                { assert new File("$outputDir/bowtie2/mergedLibrary/SPT5_T15_REP2.mLb.clN.sorted.bam").exists() },
                 { assert new File("$outputDir/bowtie2/mergedLibrary/bigwig/").exists() },
                 { assert new File("$outputDir/bowtie2/mergedLibrary/deepTools/").exists() },
                 { assert new File("$outputDir/bowtie2/mergedLibrary/macs2/").exists() },

diff --git a/tests/pipeline/test_aligner_bowtie2.nf.test.snap b/tests/pipeline/test_aligner_bowtie2.nf.test.snap