just NXF_ANSI

nf-core · Oct 10, 2024 · f9d6955 · f9d6955
1 parent 27e8a7c
commit f9d6955
Showing 1 changed file with 6 additions and 8 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -11,16 +11,14 @@ on:
 
 env:
   NXF_ANSI_LOG: false
-  NXF_SINGULARITY_CACHEDIR: ${{ github.workspace }}/.singularity
-  NXF_SINGULARITY_LIBRARYDIR: ${{ github.workspace }}/.singularity
 
 concurrency:
   group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}"
   cancel-in-progress: true
 
 jobs:
   test:
-    name: "Run pipeline with test data (${{ matrix.NXF_VER }} | ${{ matrix.test }} | ${{ matrix.profile }})"
+    name: "Run pipeline with test data (${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }})"
     # Only run on push if this is the nf-core dev branch (merged PRs)
     if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/bamtofastq') }}"
     runs-on: ubuntu-latest
@@ -33,7 +31,7 @@ jobs:
           - "conda"
           - "docker"
           - "singularity"
-        test:
+        test_name:
           - "test"
           - "test_cram"
           - "test_chr"
@@ -54,12 +52,12 @@ jobs:
       - name: Check out pipeline code
         uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4
 
-      - name: "Install Nextflow ${{ matrix.NXF_VER }}"
+      - name: Set up Nextflow
         uses: nf-core/setup-nextflow@v2
         with:
           version: "${{ matrix.NXF_VER }}"
 
-      - name: Setup apptainer
+      - name: Set up apptainer
         if: matrix.profile == 'singularity'
         uses: eWaterCycle/setup-apptainer@main
 
@@ -77,7 +75,7 @@ jobs:
           auto-update-conda: true
           channels: conda-forge,bioconda
 
-      - name: Conda setup
+      - name: Set up Conda
         if: matrix.profile == 'conda'
         run: |
           conda clean -a
@@ -91,4 +89,4 @@ jobs:
 
       - name: " Run pipeline with test data"
         run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.test }},${{ matrix.profile }} --outdir ./results
+          nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.test_name }},${{ matrix.profile }} --outdir ./results