AMPLISEQ:DADA2_PREPROCESSING: DADA2_FILTNTRIM pipeline break

[Dedaniya08]

Description of the bug

The pipeline break when the output files is missed in fetching *.filt.fastq.gz' which is expected by the process 'NFCORE_AMPLISEQ:AMPLISEQ:DADA2_PREPROCESSING:DADA2_FILTNTRIM'

The pipeline break and not wait till the process executed.

Command used and terminal output

$ nextflow run nf-core/ampliseq -r 2.11.0 -profile docker -c ./final_run_folder/nextflow.config,./final_run_folder/conf/test_modified.config, -params-file params.yaml --multiple_sequencing_runs -w ./working_dirr/

Relevant files

System information

Azure Computer Instance:

Nextflow version ( 24.10.0.5928)
Standard_F64s_V2 (64 cores, 128 GB RAM, 512 GB disk)
Executor (local)
Container engine: Docker
OS (debain ubuntu)
nf-core/ampliseq (2.11.0

[d4straub]

Closing this, explained in #813