Merge pull request #809 from erikrikarddaniel/fix-missing-library

Fix missing library
nf-core · Dec 3, 2024 · e17ab62 · e17ab62
2 parents be2d1b5 + fa76188
commit e17ab62
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -15,6 +15,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ### `Fixed`
 
 - [#800](https://github.com/nf-core/ampliseq/pull/800) - Fixed SH files for UNITE9.0, they were missing some entries due to a bug caused by API update in PlutoF
+- [#808](https://github.com/nf-core/ampliseq/pull/808) - Add missing library declaration in R script.
 
 ### `Dependencies`
 

diff --git a/modules/local/format_pplacetax.nf b/modules/local/format_pplacetax.nf
@@ -59,7 +59,7 @@ process FORMAT_PPLACETAX {
                 # then, check if reduced entries are identical > if yes, choose any row, if no, repeat
                 # at that step the taxonomies have same length
                 print( paste ( asvid,"enters STEP 3" ) )
-                list_taxonpath <- str_split( temp\$taxopath, ";")
+                list_taxonpath <- stringr::str_split( temp\$taxopath, ";")
                 df_taxonpath <- as.data.frame(do.call(rbind, list_taxonpath))
                 for (i in ncol(df_taxonpath):0) {
                     # choose first column and change taxon to reduced overlap