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update genome in docs
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nvnieuwk committed May 25, 2023
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Expand Up @@ -55,7 +55,7 @@ An [example samplesheet](../assets/samplesheet.csv) has been provided with the p
The typical command for running the pipeline is as follows:

```bash
nextflow run CenterForMedicalGeneticsGhent/nf-cmgg-structural --input samplesheet.csv --outdir <OUTDIR> --genome GRCh37 -profile docker
nextflow run CenterForMedicalGeneticsGhent/nf-cmgg-structural --input samplesheet.csv --outdir <OUTDIR> --genome GRCh38 -profile docker
```

This will launch the pipeline with the `docker` configuration profile. See below for more information about profiles.
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