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CI failure: nextclade3 command not found #50

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jameshadfield opened this issue Dec 20, 2023 · 2 comments · Fixed by nextstrain/conda-base#50
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CI failure: nextclade3 command not found #50

jameshadfield opened this issue Dec 20, 2023 · 2 comments · Fixed by nextstrain/conda-base#50
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@victorlin
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@jameshadfield
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jameshadfield commented Dec 20, 2023 •
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Failure observed from Augur PR 1348 while it ran it's pathogen-repo-rsv workflow. Error:

 /home/runner/micromamba/envs/augur/bin/bash: line 2: nextclade3: command not found

(Direct link to the failing CI job)

I haven't investigated more. Tagging @corneliusroemer as I know you're on top of the migration here!
@jameshadfield jameshadfield added the bug Something isn't working label Dec 20, 2023
This was referenced Dec 20, 2023
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Expected failure due to lack of Nextclade 3 in conda, not a bug

Docker passes

This was referenced Dec 20, 2023
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@victorlin victorlin self-assigned this Dec 22, 2023
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Fixed by nextstrain/conda-base#50.

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Add nextclade3 via direct download nextstrain/conda-base
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@jameshadfield @victorlin @corneliusroemer