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Fix RBD level coloring and filter #1094

Merged
merged 6 commits into from
Jan 31, 2024
Merged

Fix RBD level coloring and filter #1094

merged 6 commits into from
Jan 31, 2024

Commits on Jan 29, 2024

  1. auspice_config: Remove filter level

    The filter `level` was originally added in
    5a71d77
    for RBD level but was the wrong field name.
    
    The correct filter `rbd_level` was later added in
    1b4846a.
    joverlee521 committed Jan 29, 2024
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Commits on Jan 30, 2024

  1. assign_rbd_levels: Update basal_clade_label

    The clade labels were updated in #1065.
    Update the clade label so that the `assign_rbd_levels` script can find
    the correct basal clade.
    
    I had considered pulling this value out as a parameter in the config YAML,
    but the original commit message¹ implies that this should _not_ be
    configurable.
    
    ¹ fb5f44e
    joverlee521 committed Jan 30, 2024
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  2. script/assign_rbd_levels: Update clade parsing

    The JSON output from `augur clades` was updated to separate `nodes`
    and `branches` in nextstrain/augur#728 so now
    the `assign_rbd_levels` script needs to parse the `branches` in order
    to find the basal node.
    joverlee521 committed Jan 30, 2024
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  3. Update changelog

    joverlee521 committed Jan 30, 2024
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