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Update subsampling #1074

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merged 4 commits into from
Jun 17, 2023
Merged

Update subsampling #1074

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9fd01c6
Update global subsampling
trvrb Jun 14, 2023
92f8196
Update subsampling for region Asia
trvrb Jun 15, 2023
0da5ed3
Tweak global subsampling targets
trvrb Jun 15, 2023
bbc9b0a
Update change log
trvrb Jun 17, 2023
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2 changes: 2 additions & 0 deletions docs/src/reference/change_log.md
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Expand Up @@ -5,6 +5,8 @@ We also use this change log to document new features that maintain backward comp

## New features since last version update

- 17 June 2023: Update subsampling strategy for `nextstrain_profiles` to better equilibrate per-capita sampling rates across geographic regions. Primarily this update breaks out China and India as separate subsampling targets because of their large population sizes. It also fine tunes the per-region sampling targets. After this update, URL structure (ie https://nextstrain.org/ncov/gisaid/global/6m) is unchanged. [PR 1074](https://github.com/nextstrain/ncov/pull/1074)

## v13 (16 May 2022)

- 16 May 2023: Update workflow to support [Augur v22](https://github.com/nextstrain/augur/releases/tag/22.0.0) which updates the `augur clades` interface and structure of the output files to allow specifying the clade label & coloring keys. Because we use custom scripts to parse these files this worflow also needed updating. This change results in a simplifying of the nCoV pipeline (PR [1000](https://github.com/nextstrain/ncov/pull/1000)).
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