Map "Lineage" to "pango_lineage"

To support GISAID's patient status metadata as an input format that's consistent with the rest of our workflow, map the "Lineage" column to its Nextstrain equivalent (since this column contains the PANGO lineage).
nextstrain · Aug 4, 2021 · 3c8c8bc · 3c8c8bc
1 parent 80a36fb
commit 3c8c8bc
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/defaults/parameters.yaml b/defaults/parameters.yaml
@@ -23,6 +23,7 @@ sanitize_metadata:
     - "Gender=sex"
     - "Clade=GISAID_clade"
     - "Pango lineage=pango_lineage"
+    - "Lineage=pango_lineage"
     - "Pangolin version=pangolin_version"
     - "Variant=variant"
     - "AA Substitutions=aa_substitutions"