Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update clade definition and coloring #274

Merged
merged 1 commit into from
Aug 27, 2024
Merged

Commits on Aug 23, 2024

  1. Update clade definition and coloring

    This commit:
    
    1. Very slightly changes clade definition for "clade II". This results in no change to the resulting clade assignments.
    
    Previously clade II definitions included nucleotide positions 35253 and 150970. However, neither of these positions show variation:
    - nextstrain.org/mpox/all-clades?c=gt-nuc_35253
    - nextstrain.org/mpox/all-clades?c=gt-nuc_150970
    
    I updated these sites to 20605 and 174146 which show variation between clades I and II.
    
    2. The color ordering lacked entries for clade Ia and clade Ib. This resulted in gray colors for these two clades at nextstrain.org/mpox/all-clades.
    trvrb committed Aug 23, 2024
    Configuration menu
    Copy the full SHA
    df03089 View commit details
    Browse the repository at this point in the history