Add new lineages B.1.21, B.1.22, C.1.1 to phylogenetic

nextstrain · Apr 17, 2024 · 6425162 · 6425162
1 parent ca836a8
commit 6425162
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diff --git a/phylogenetic/build-configs/ci/config.yaml b/phylogenetic/build-configs/ci/config.yaml
@@ -54,7 +54,10 @@ subsample:
       - B.1.18
       - B.1.19
       - B.1.20
+      - B.1.21
+      - B.1.22
       - C.1
+      - C.1.1
   b1:
     group_by: "--group-by country year"
     sequences_per_group: "--subsample-max-sequences 100"

diff --git a/phylogenetic/defaults/clades.tsv b/phylogenetic/defaults/clades.tsv
@@ -61,6 +61,10 @@ C.1	nuc	55133	A
 C.1	nuc	64426	T
 C.1	nuc	105923	A
 
+C.1.1	clade	C.1
+C.1.1	nuc	21062	T
+C.1.1	nuc	149963	T
+
 B.1.4	clade	B.1
 B.1.4	nuc	34308	A
 
@@ -123,3 +127,11 @@ B.1.20	clade	B.1
 B.1.20	nuc	53326	A
 B.1.20	nuc	164385	T
 B.1.20	nuc	187620	T
+
+B.1.21	clade	B.1
+B.1.21	nuc	22415	A
+B.1.21	nuc	132698	T
+
+B.1.22	clade	B.1
+B.1.22	nuc	34784	T
+B.1.22	nuc	101418	T
diff --git a/phylogenetic/defaults/color_ordering.tsv b/phylogenetic/defaults/color_ordering.tsv
@@ -16904,6 +16904,7 @@ lineage	B.1.1
 lineage	B.1.2
 lineage	B.1.3
 lineage	C.1
+lineage	C.1.1
 lineage	B.1.4
 lineage	B.1.5
 lineage	B.1.6
@@ -16921,6 +16922,8 @@ lineage	B.1.17
 lineage	B.1.18
 lineage	B.1.19
 lineage	B.1.20
+lineage	B.1.21
+lineage	B.1.22
 lineage	A.2
 lineage	A.2.1
 lineage	A.2.2

diff --git a/phylogenetic/defaults/hmpxv1/config.yaml b/phylogenetic/defaults/hmpxv1/config.yaml
@@ -51,7 +51,10 @@ subsample:
       - B.1.18
       - B.1.19
       - B.1.20
+      - B.1.21
+      - B.1.22
       - C.1
+      - C.1.1
   b1:
     group_by: "--group-by country year"
     sequences_per_group: "--subsample-max-sequences 100"

diff --git a/phylogenetic/defaults/mpxv/config.yaml b/phylogenetic/defaults/mpxv/config.yaml
@@ -49,7 +49,10 @@ subsample:
       - B.1.18
       - B.1.19
       - B.1.20
+      - B.1.21
+      - B.1.22
       - C.1
+      - C.1.1
   b1:
     group_by: "--group-by country year"
     sequences_per_group: "--subsample-max-sequences 100"