Scheduled NEURON CI #1663
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| name: Scheduled NEURON CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| schedule: | |
| # Run at 2am every day | |
| - cron: '0 2 * * *' | |
| workflow_dispatch: | |
| inputs: | |
| azure_drop_url: | |
| description: 'Azure drop (artifacts) url' | |
| neuron_branch: | |
| description: 'NEURON branch to test' | |
| default: '' | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| ci: | |
| timeout-minutes: 45 | |
| runs-on: ${{ matrix.os.vm }} | |
| container: ${{ matrix.os.container }} | |
| name: "blabla" | |
| env: | |
| OS_FLAVOUR: ${{matrix.os.flavour}} | |
| UNPRIVILEGED_USER: runner # User created+used inside Docker containers | |
| # Extra software collections to be installed and enabled on CentOS7 | |
| SOFTWARE_COLLECTIONS_centos_7: devtoolset-9 rh-git218 rh-python38 | |
| strategy: | |
| matrix: | |
| os: | |
| # Ubuntu Latest (22.04, at time of writing) Docker image | |
| - { vm: ubuntu-latest, container: "ubuntu:latest", flavour: debian } | |
| fail-fast: false | |
| steps: | |
| # Checkout the dedicated repository that steers the CI build | |
| - uses: actions/checkout@v3 | |
| # Install required packages using the system package manager. This | |
| # includes installing or updating the git client to a sufficiently | |
| # new version that the checkout of the main nrn repository does *not* | |
| # fall back to using the REST API, which clobbers submodule information | |
| # and breaks the build. | |
| - name: Install ${{matrix.os.flavour}} packages | |
| run: | | |
| OS_CONTAINER="${{matrix.os.container}}" | |
| # only the part after the last slash | |
| OS_CONTAINER="${OS_CONTAINER##*/}" | |
| # replace : and . with _ | |
| OS_CONTAINER="${OS_CONTAINER//[:.]/_}" | |
| CONTAINER_SCRIPT="scripts/install_${{matrix.os.flavour}}_${OS_CONTAINER}.sh" | |
| # pass this on to the next steps too, for convenience | |
| echo "OS_CONTAINER=${OS_CONTAINER}" >> "${GITHUB_ENV}" | |
| # (container+flavour)-specific script runs first because it must be | |
| # able to enable repositories that make the flavour-specific script | |
| # work. | |
| if [ -f "${CONTAINER_SCRIPT}" ]; then source "${CONTAINER_SCRIPT}"; fi | |
| if [ -f "${FLAVOUR_SCRIPT}" ]; then source "${FLAVOUR_SCRIPT}"; fi | |
| env: | |
| FLAVOUR_SCRIPT: scripts/install_${{matrix.os.flavour}}.sh | |
| # Checkout the repository; do this before the privilege step so that we | |
| # can chown the result there | |
| - name: Checkout NEURON | |
| working-directory: ${{github.workspace}} | |
| run: | | |
| branch_or_tag="${{matrix.branch_or_tag_and_default_wheel.branch_or_tag}}" | |
| echo "branch_or_tag=${branch_or_tag}" | |
| if [ -n "${branch_or_tag}" ]; then BRANCH_OPT="--branch=${branch_or_tag}"; fi | |
| git clone --depth=1 --single-branch ${BRANCH_OPT} ${{github.server_url}}/${{github.repository_owner}}/nrn | |
| # Init submodules for testing purposes | |
| cd nrn && git submodule update --init --recursive | |
| python -m venv env | |
| source env/bin/activate | |
| env/bin/python -m pip install neuron-nightly pytest | |
| env/bin/python -m pytest -k test_multi_gridding_mix |