fix imports

nobrainer/ext/lab2im/edit_tensors.py

@@ -31,11 +31,11 @@
 from itertools import combinations
 
 # project imports
-from ext.lab2im import utils
+from nobrainer.ext.lab2im import utils
 
 # third-party imports
-import ext.neuron.layers as nrn_layers
-from ext.neuron.utils import volshape_to_meshgrid
+import nobrainer.ext.neuron.layers as nrn_layers
+from nobrainer.ext.neuron.utils import volshape_to_meshgrid
 
 
 def blurring_sigma_for_downsampling(current_res, downsample_res, mult_coef=None, thickness=None):

nobrainer/ext/lab2im/edit_volumes.py

@@ -85,9 +85,9 @@
 from scipy.ndimage import binary_dilation, binary_erosion, gaussian_filter
 
 # project imports
-from ext.lab2im import utils
-from ext.lab2im.layers import GaussianBlur, ConvertLabels
-from ext.lab2im.edit_tensors import blurring_sigma_for_downsampling
+from nobrainer.ext.lab2im import utils
+from nobrainer.ext.lab2im.layers import GaussianBlur, ConvertLabels
+from nobrainer.ext.lab2im.edit_tensors import blurring_sigma_for_downsampling
 
 
 # ---------------------------------------------------- edit volume -----------------------------------------------------

nobrainer/ext/lab2im/image_generator.py

@@ -19,9 +19,9 @@
 import numpy.random as npr
 
 # project imports
-from ext.lab2im import utils
-from ext.lab2im import edit_volumes
-from ext.lab2im.lab2im_model import lab2im_model
+from nobrainer.ext.lab2im import utils
+from nobrainer.ext.lab2im import edit_volumes
+from nobrainer.ext.lab2im.lab2im_model import lab2im_model
 
 
 class ImageGenerator:

nobrainer/ext/lab2im/lab2im_model.py

@@ -20,9 +20,9 @@
 from keras.models import Model
 
 # project imports
-from ext.lab2im import utils
-from ext.lab2im import layers
-from ext.lab2im.edit_tensors import resample_tensor, blurring_sigma_for_downsampling
+from nobrainer.ext.lab2im import utils
+from nobrainer.ext.lab2im import layers
+from nobrainer.ext.lab2im.edit_tensors import resample_tensor, blurring_sigma_for_downsampling
 
 
 def lab2im_model(labels_shape,

nobrainer/ext/lab2im/layers.py

@@ -43,12 +43,12 @@
 from keras.layers import Layer
 
 # project imports
-from ext.lab2im import utils
-from ext.lab2im import edit_tensors as l2i_et
+from nobrainer.ext.lab2im import utils
+from nobrainer.ext.lab2im import edit_tensors as l2i_et
 
 # third-party imports
-from ext.neuron import utils as nrn_utils
-import ext.neuron.layers as nrn_layers
+from nobrainer.ext.neuron import utils as nrn_utils
+import nobrainer.ext.neuron.layers as nrn_layers
 
 
 class RandomSpatialDeformation(Layer):

nobrainer/ext/neuron/__init__.py

@@ -0,0 +1,3 @@
+from . import layers
+from . import models
+from . import utils