Merge pull request #17 from nel-lab/fix-add-background

fix #15
nel-lab · May 21, 2022 · 57746c4 · 57746c4
2 parents 5e06ce7 + 8e11d2b
commit 57746c4
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/mesmerize_core/caiman_extensions/cnmf.py b/mesmerize_core/caiman_extensions/cnmf.py
@@ -173,7 +173,7 @@ def get_spatial_contour_coors(self, ixs_components: np.ndarray) -> List[np.ndarr
         return coordinates
 
     @validate('cnmf')
-    def get_temporal_components(self, ixs_components: np.ndarray = None, add_background: bool = True) -> np.ndarray:
+    def get_temporal_components(self, ixs_components: np.ndarray = None, add_background: bool = False) -> np.ndarray:
         """
         Get the temporal components for this CNMF item
 
@@ -231,4 +231,4 @@ def get_reconstructed_movie(self, ixs_frames: Tuple[int, int] = None, add_backgr
 
         if add_background:
             dn += (cnmf_obj.estimates.b.dot(cnmf_obj.estimates.f[:, ixs_frames[0]:ixs_frames[1]]))
-        return dn.reshape(cnmf_obj.dims + (-1,), order='F').transpose([2, 0, 1])
+        return dn.reshape(cnmf_obj.dims + (-1,), order='F').transpose([2, 0, 1])