new classification of aqp functions using regex -- sorting stuff out …

…for aqp2

misc/aqp2/function-dependencies.R

@@ -1,9 +1,64 @@
-#devtools::install_github("datastorm-open/DependenciesGraphs")
-library(DependenciesGraphs)
-library(aqp) 
+# functions
+aqp.functions <- getNamespaceExports("aqp")
+aqp.functions <- aqp.functions[-grep("_[TC]_", aqp.functions)]
+aqp.grp <- vector('list')
 
-deps <- funDependencies("package:aqp", "getArgillicBounds")
-plot(deps)
+# plotting functions
+plot.idx <- grep("[Pp]lot|add|find|fix|segments", aqp.functions)
+aqp.grp[['plot']] <- sort(aqp.functions[plot.idx])
+aqp.functions <- aqp.functions[-plot.idx]
 
-edeps <- envirDependencies("package:aqp")
-plot(edeps)
+# soil color
+color.idx <- grep("[Cc]olor|red|dark|melan|rubif|[Mm]unsell|rgb|contrast|hue|buntley|Palette", aqp.functions)
+aqp.grp[['color']] <- sort(aqp.functions[color.idx])
+aqp.functions <- aqp.functions[-color.idx]
+
+# soil texture
+texture.idx <- grep("tex", aqp.functions)
+aqp.grp[['texture']] <- sort(aqp.functions[texture.idx])
+aqp.functions <- aqp.functions[-texture.idx]
+
+# soilprofilecollection operations
+spccalc.idx <- grep("sim|get|estim|clay|mollic", aqp.functions)
+aqp.grp[['spccalc']] <- sort(aqp.functions[spccalc.idx])
+aqp.functions <- aqp.functions[-spccalc.idx]
+
+spc.idx <- grep("^l?un|split|SPC|spc|[Hh]orizon|[Ss]ite|subset|filter|mutate|[Pp]rofile|Apply|glom|<-|[Hh]z|id|length|nrow|min|max|[Dd]epthOf|coord|proj|denorm|meta|restrict|aqp|check|guess", aqp.functions)
+aqp.grp[['spc']] <- sort(aqp.functions[spc.idx])
+aqp.functions <- aqp.functions[-spc.idx]
+
+# aggregate profiles
+spc.agg.idx <- grep("aggregate|eval|slice|[Ss]lab|group|summarize|pc", aqp.functions)
+aqp.grp[['spcagg']] <- sort(aqp.functions[spc.agg.idx])
+aqp.functions <- aqp.functions[-spc.agg.idx]
+
+# xrd
+xrd.idx <- grep("noise|twotheta", aqp.functions)
+aqp.grp[['xrd']] <- sort(aqp.functions[xrd.idx])
+aqp.functions <- aqp.functions[-xrd.idx]
+
+# classification
+tau.idx <- grep("[Tt]au|confusion|shannon|brier", aqp.functions)
+aqp.grp[['classification']] <- sort(aqp.functions[tau.idx])
+aqp.functions <- aqp.functions[-tau.idx]
+
+
+lapply(aqp.grp, length)
+
+View(aqp.grp)
+
+# devtools::install_github("datastorm-open/DependenciesGraphs")
+#
+# library(DependenciesGraphs)
+# library(aqp)
+# deps <- funDependencies("package:aqp", "getArgillicBounds")
+# plot(deps)
+# # 
+# edeps <- envirDependencies("package:aqp")
+# plot(edeps)
+
+library(mvbutils)
+library(aqp)
+library(reshape)
+ixWhere <- match(c("package:aqp","package:reshape"), search())
+foodweb(where = ixWhere, prune = ls("package:reshape"), descendents = FALSE)