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@ncct-mibi

NCCT Microbiology

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  1. nxf-bcl nxf-bcl Public

    Forked from angelovangel/nxf-bcl

    A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)

    Nextflow 1

  2. nxf-fastqc nxf-fastqc Public

    Forked from angelovangel/nxf-fastqc

    A simple fastp-MultiQC nextflow pipeline

    Nextflow

  3. nxf-kraken2 nxf-kraken2 Public

    Forked from angelovangel/nxf-kraken2

    A simple nextflow pipeline for running kraken2 and bracken in a docker container

    Nextflow

  4. etc etc Public

    Forked from angelovangel/etc

    Various workflows, scripts and functions

    R

  5. utils utils Public

    Shell

  6. documentation_IT documentation_IT Public

    Documentation about the pipelines and generell IT settings

Repositories

Showing 10 of 12 repositories
  • etc Public Forked from angelovangel/etc

    Various workflows, scripts and functions

    ncct-mibi/etc’s past year of commit activity
    R 0 1 0 0 Updated Sep 12, 2023
  • nxf-bacass_samlpesheet_generator Public Forked from jenmuell/nxf-bacass_samplesheet_generator
    ncct-mibi/nxf-bacass_samlpesheet_generator’s past year of commit activity
    Nextflow 0 1 0 0 Updated Oct 25, 2021
  • utils Public
    ncct-mibi/utils’s past year of commit activity
    Shell 0 0 0 0 Updated Sep 2, 2021
  • ont-ncct Public Forked from xlinxlin/ont-ncct

    Pipeline with GUI for nanopore-sequencing.

    ncct-mibi/ont-ncct’s past year of commit activity
    Java 0 2 0 0 Updated Sep 2, 2021
  • ngs-reports Public Forked from angelovangel/ngs-reports

    Advanced Rmarkdown templates for generating NGS reports

    ncct-mibi/ngs-reports’s past year of commit activity
    R 0 2 0 0 Updated Sep 2, 2021
  • nxf-fastqc Public Forked from angelovangel/nxf-fastqc

    A simple fastp-MultiQC nextflow pipeline

    ncct-mibi/nxf-fastqc’s past year of commit activity
    Nextflow 0 6 0 0 Updated Sep 2, 2021
  • nxf-bcl Public Forked from angelovangel/nxf-bcl

    A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)

    ncct-mibi/nxf-bcl’s past year of commit activity
    Nextflow 0 3 0 0 Updated Sep 2, 2021
  • nxf-ont Public Forked from angelovangel/nxf-ont

    A nextflow pipeline for processing raw Nanopore data

    ncct-mibi/nxf-ont’s past year of commit activity
    Nextflow 0 3 0 0 Updated Sep 2, 2021
  • nxf-kraken2 Public Forked from angelovangel/nxf-kraken2

    A simple nextflow pipeline for running kraken2 and bracken in a docker container

    ncct-mibi/nxf-kraken2’s past year of commit activity
    Nextflow 0 MIT 7 0 0 Updated Sep 2, 2021
  • documentation_IT Public

    Documentation about the pipelines and generell IT settings

    ncct-mibi/documentation_IT’s past year of commit activity
    0 0 0 0 Updated Aug 25, 2021
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