Skip to content

Commit

Permalink
Merge pull request #17 from nanxstats/news
Browse files Browse the repository at this point in the history
Update news for v0.2.0
  • Loading branch information
nanxstats authored Sep 1, 2024
2 parents b315283 + 5ab40f7 commit 7a971be
Show file tree
Hide file tree
Showing 2 changed files with 21 additions and 4 deletions.
4 changes: 2 additions & 2 deletions DESCRIPTION
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
Package: ssw
Title: Striped Smith-Waterman Algorithm for Sequence Alignment using SIMD
Version: 0.1.1
Version: 0.2.0
Authors@R: c(
person("Nan", "Xiao", email = "me@nanx.me", role = c("aut", "cre"),
person("Nan", "Xiao", email = "me@nanx.me", role = c("aut", "cre", "cph"),
comment = c(ORCID = "0000-0002-0250-5673"))
)
Description: Provides an R interface for 'SSW' (Striped Smith-Waterman)
Expand Down
21 changes: 19 additions & 2 deletions NEWS.md
Original file line number Diff line number Diff line change
@@ -1,7 +1,24 @@
# ssw 0.2.0

## Improvements

- Add helper function `install_ssw_py()` for easy installation of Python
package dependency following best practices (#9).
- Use consistent symbol name `ssw_py` for the imported Python package (#10).
- Update reticulate wrapper to work with ssw-py >= 1.0.0 (#11).
- Qualify namespaces explicitly when calling external functions (#15).

## Documentation

- Run code examples and vignette code chunks conditionally (#5).
- Use GitHub Actions workflows to run `R CMD check` and to build pkgdown site (#6).
- Update installation sections in `README.md` (#12).
- Rewrite function reference documentation to improve clarity (#14).

# ssw 0.1.1

Added two arguments `match_score` and `mismatch_penalty` for scoring the matches and mismatches ([#1](https://github.com/nanxstats/ssw-r/issues/1)).
- Added two arguments `match_score` and `mismatch_penalty` for scoring the matches and mismatches (#1).

# ssw 0.1.0

First version. Implements `align()` and `force_align()`.
- First version. Implements `align()` and `force_align()`.

0 comments on commit 7a971be

Please sign in to comment.