medaka model + zymo results

nanoporetech · Nov 15, 2020 · 5810be8 · 5810be8
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@@ -77,6 +77,21 @@ The `pairs.csv` file is expected to contain pairs of read ids per line *(seperat
  - `bonito download` - download pretrained models and training datasets.
  - `bonito basecaller` - basecaller *(`.fast5` -> `.fasta`)*.
 
+# Medaka
+
+The Medaka can be downloaded from [here](https://nanoporetech.box.com/shared/static/ve8445ceb2bnwod1zaj0z2ptuwsvxd64.hdf5).
+
+| Coverage | B. subtilis | E. coli | E. faecalis | L. monocytogenes | P. aeruginosa | S. aureus | S. enterica |
+| -------- |:-----------:|:-------:|:-----------:|:----------------:|:-------------:|:---------:|:-----------:|
+|       25 |       38.86 |   42.60 |       40.24 |            41.55 |         41.55 |     43.98 |       36.78 |
+|       50 |       39.36 |   45.23 |       43.01 |            43.98 |         45.34 |     46.99 |       38.07 |
+|       75 |       43.98 |   45.23 |       45.23 |            45.23 |         50.00 |     46.99 |       38.36 |
+|      100 |       43.98 |   46.99 |       45.23 |            46.99 |         50.00 |     50.00 |       39.39 |
+|      125 |       45.23 |   45.23 |       45.23 |            45.23 |         50.00 |     50.00 |       39.39 |
+|      150 |       45.23 |   46.99 |       46.99 |            46.99 |         50.00 |     50.00 |       39.59 |
+|      175 |       45.23 |   46.99 |       46.99 |            46.99 |         50.00 |     50.00 |       39.59 |
+|      200 |       46.99 |   46.99 |       50.00 |            50.00 |         50.00 |     50.00 |       40.00 |
+
 ### References
 
  - [Sequence Modeling With CTC](https://distill.pub/2017/ctc/)