rebuild for package installation

naikai · Nov 4, 2019 · 9bb22b2 · 9bb22b2
1 parent 212c756
commit 9bb22b2
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Showing 84 changed files with 107 additions and 191 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -73,5 +73,5 @@ Suggests:
     knitr
 License: GPL (>=2)
 LazyData: TRUE
-RoxygenNote: 5.0.1
+RoxygenNote: 6.1.1
 VignetteBuilder: knitr
diff --git a/NAMESPACE b/NAMESPACE
@@ -7,6 +7,7 @@ export(cal_entropy)
 export(centroid_classify)
 export(clean_iterNMF)
 export(clust_by_hier)
+export(clust_silhouette)
 export(comp_module_genelist)
 export(compare_group)
 export(compare_groups_stats)
@@ -30,6 +31,7 @@ export(featureUI)
 export(gene_convert_human_to_mouse)
 export(gene_convert_mouse_to_human)
 export(get_ClaNC_group)
+export(getcentroid)
 export(heatmap.3)
 export(is.whole)
 export(iter_nmf)
@@ -59,6 +61,7 @@ export(nmfres)
 export(nmfresUI)
 export(norm_factors)
 export(parse_tsne_res)
+export(plot_cor_subiNMF)
 export(plot_gene_expression)
 export(plot_modules)
 export(plot_tsne)

diff --git a/man/NetConnectivity.Rd b/man/NetConnectivity.Rd
diff --git a/man/RPM.Rd b/man/RPM.Rd
diff --git a/man/UQ.Rd b/man/UQ.Rd
diff --git a/man/Usoskin.Rd b/man/Usoskin.Rd
diff --git a/man/affy_probe_to_gene_symbol.Rd b/man/affy_probe_to_gene_symbol.Rd
diff --git a/man/assign_label_cex.Rd b/man/assign_label_cex.Rd
diff --git a/man/cal_entropy.Rd b/man/cal_entropy.Rd
diff --git a/man/centroid_classify.Rd b/man/centroid_classify.Rd
diff --git a/man/clean_iterNMF.Rd b/man/clean_iterNMF.Rd
diff --git a/man/clust_by_hier.Rd b/man/clust_by_hier.Rd
diff --git a/man/clust_silhouette.Rd b/man/clust_silhouette.Rd
diff --git a/man/comp_module_genelist.Rd b/man/comp_module_genelist.Rd
diff --git a/man/compare_group.Rd b/man/compare_group.Rd
diff --git a/man/compare_groups_stats.Rd b/man/compare_groups_stats.Rd
diff --git a/man/connect_gap_modules.Rd b/man/connect_gap_modules.Rd
diff --git a/man/corModuleUI.Rd b/man/corModuleUI.Rd
diff --git a/man/cor_mtest.Rd b/man/cor_mtest.Rd
diff --git a/man/create.brewer.color.Rd b/man/create.brewer.color.Rd
diff --git a/man/create.manual.color.Rd b/man/create.manual.color.Rd
diff --git a/man/create_centroid.Rd b/man/create_centroid.Rd
diff --git a/man/def_net_module2.Rd b/man/def_net_module2.Rd
diff --git a/man/def_net_modules.Rd b/man/def_net_modules.Rd
diff --git a/man/deseq_norm.Rd b/man/deseq_norm.Rd
diff --git a/man/detect_genecnt_ID.Rd b/man/detect_genecnt_ID.Rd
diff --git a/man/detect_genecnt_platform.Rd b/man/detect_genecnt_platform.Rd
diff --git a/man/ext_gene_function.Rd b/man/ext_gene_function.Rd
diff --git a/man/extract_data_by_mad.Rd b/man/extract_data_by_mad.Rd
diff --git a/man/extract_data_by_math.Rd b/man/extract_data_by_math.Rd
diff --git a/man/gene_convert_human_to_mouse.Rd b/man/gene_convert_human_to_mouse.Rd
diff --git a/man/gene_convert_mouse_to_human.Rd b/man/gene_convert_mouse_to_human.Rd
diff --git a/man/get_ClaNC_group.Rd b/man/get_ClaNC_group.Rd
diff --git a/man/getcentroid.Rd b/man/getcentroid.Rd
diff --git a/man/heatmap.3.Rd b/man/heatmap.3.Rd
diff --git a/man/is.whole.Rd b/man/is.whole.Rd
diff --git a/man/iter_nmf.Rd b/man/iter_nmf.Rd
diff --git a/man/load_genelist.Rd b/man/load_genelist.Rd
diff --git a/man/load_geneset.Rd b/man/load_geneset.Rd
diff --git a/man/module_finder.Rd b/man/module_finder.Rd
diff --git a/man/multiplot.Rd b/man/multiplot.Rd
diff --git a/man/mutual_info_from_confmatrix.Rd b/man/mutual_info_from_confmatrix.Rd
diff --git a/man/mutual_info_from_vector.Rd b/man/mutual_info_from_vector.Rd