added dockerfile

sadasadam.dockerfile

@@ -0,0 +1,168 @@
+# This file builds a Docker base image for its use in other projects
+
+# Copyright (C) 2020-2021 Gergely Padányi-Gulyás (github user fegyi001),
+#                         David Frantz
+#                         Fabian Lehmann
+
+FROM ubuntu:22.04 as builder
+
+# disable interactive frontends
+ENV DEBIAN_FRONTEND=noninteractive
+
+# Refresh package list & upgrade existing packages
+RUN apt-get -y update && apt-get -y upgrade && \
+# Add PPA for Python 3.x and R 4.0
+apt -y install software-properties-common dirmngr && \
+apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9 && \
+add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -sc)-cran40/"
+
+RUN apt-get -y install \
+  wget \
+  unzip \
+  dos2unix \
+  curl \
+  git \
+  build-essential \
+  libgdal-dev \
+  gdal-bin \
+  #python-gdal \
+  libarmadillo-dev \
+  libfltk1.3-dev \
+  libgsl0-dev \
+  lockfile-progs \
+  rename \
+  parallel \
+  apt-utils \
+  cmake \
+  libgtk2.0-dev \
+  pkg-config \
+  libavcodec-dev \
+  libavformat-dev \
+  libswscale-dev \
+  python3 \
+  python3-pip \
+  python3-numpy \
+  python3-scipy \
+  python3-gdal \
+  pandoc \
+  r-base \
+  aria2 && \
+# Set python aliases for Python 3.x
+echo 'alias python=python3' >> ~/.bashrc \
+  && echo 'alias pip=pip3' >> ~/.bashrc \
+  && . ~/.bashrc
+#
+# NumPy is needed for OpenCV, gsutil for level1-csd, landsatlinks for level1-landsat (requires gdal/requests/tqdm)
+RUN pip3 install --no-cache-dir --upgrade pip && \
+    pip3 install --no-cache-dir  \
+        gsutil \
+        git+https://github.com/ernstste/landsatlinks.git && \
+#
+# Install R packages
+Rscript -e 'install.packages("rmarkdown",   repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("plotly",      repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("stringi",     repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("stringr",     repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("tm",          repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("knitr",       repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("dplyr",       repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("bib2df",      repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("wordcloud",   repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("network",     repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("intergraph",  repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("igraph",      repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("htmlwidgets", repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("raster",      repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("sp",          repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("rgdal",       repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("snow",        repos="https://cloud.r-project.org")' && \
+Rscript -e 'install.packages("snowfall",    repos="https://cloud.r-project.org")'
+#
+# Clear installation data
+RUN apt-get install -y python3-opencv libopencv-dev libopencv-ml-dev && apt-get clean && rm -r /var/cache/
+
+# Install folder
+ENV INSTALL_DIR /opt/install/src
+
+# Build OpenCV from source
+# RUN mkdir -p $INSTALL_DIR/opencv && cd $INSTALL_DIR/opencv && \
+# wget https://github.com/opencv/opencv/archive/4.1.2.zip \
+#   && unzip 4.1.2.zip && \
+# mkdir -p $INSTALL_DIR/opencv/opencv-4.1.2/build && \
+# cd $INSTALL_DIR/opencv/opencv-4.1.2/build && \
+# cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr/local .. \
+#   && make -j7 \
+#   && make install \
+#   && make clean && \
+
+# Build SPLITS from source
+RUN mkdir -p $INSTALL_DIR/splits && \
+cd $INSTALL_DIR/splits && \
+wget http://sebastian-mader.net/wp-content/uploads/2017/11/splits-1.9.tar.gz && \
+tar -xzf splits-1.9.tar.gz && \
+cd $INSTALL_DIR/splits/splits-1.9 && \
+./configure CPPFLAGS="-I /usr/include/gdal" CXXFLAGS=-fpermissive \
+  && make \
+  && make install \
+  && make clean && \
+#
+# Cleanup after successfull builds
+rm -rf $INSTALL_DIR
+#RUN apt-get purge -y --auto-remove apt-utils cmake git build-essential software-properties-common
+
+# Create a dedicated 'docker' group and user
+RUN groupadd docker && \
+  useradd -m docker -g docker -p docker && \
+  chmod 0777 /home/docker && \
+  chgrp docker /usr/local/bin && \
+  mkdir -p /home/docker/bin && chown docker /home/docker/bin
+# Use this user by default
+USER docker
+
+ENV HOME /home/docker
+ENV PATH "$PATH:/home/docker/bin:/home/docker/.local/bin"
+
+ENV SOURCE_DIR $HOME/src/force
+ENV INSTALL_DIR $HOME/bin
+ARG debug=disable
+
+RUN mkdir -p $SOURCE_DIR
+WORKDIR $SOURCE_DIR
+RUN wget https://github.com/davidfrantz/force/archive/refs/tags/v3.7.12.tar.gz
+RUN tar xf v3.7.12.tar.gz
+RUN mv force-3.7.12/* .
+RUN rm -rf v3.7.12.tar.gz force-3.7.12/
+
+RUN ls -lh
+
+RUN echo "building FORCE" && \
+  ./splits.sh enable && \
+  ./debug.sh $debug && \
+  sed -i "/^BINDIR=/cBINDIR=$INSTALL_DIR/" Makefile && \
+  sed -i "/^OPENCV=/cOPENCV=-I/usr/include/opencv4 -L/usr/lib -Wl,-rpath=/usr/lib/" Makefile && \
+  make -j && \
+  make install && \
+  make clean && \
+  cd $HOME && \
+  rm -rf $SOURCE_DIR && \
+  force
+
+WORKDIR $HOME
+# clone FORCE UDF
+RUN git clone https://github.com/davidfrantz/force-udf.git
+
+#FROM ubuntu:22.04 as force
+
+#COPY --chown=docker:docker --from=force_builder $HOME/bin $HOME/bin
+RUN mv $HOME/force-udf $HOME/udf
+
+ENV SADA_DIR $HOME/src/sadasadam
+RUN mkdir -p $SADA_DIR
+WORKDIR $SADA_DIR
+COPY --chown=docker:docker . .
+
+RUN export -p
+
+RUN pip install .
+
+CMD ["sadasadam", "--help"]