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Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Perl 383 219
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
R 150 67
Filters for false-positive mutation calls in NGS
R 30 21
Forked from rhshah/iCallSV
A Framework to call Structural Variants from NGS based datasets
Python 3 1
Create mutation signatures from MAF's, and decompose them into Stratton signatures
R 60 30
Beagle API Command Line Utility
CCS research pipeline to process WES and WGS TN pairs
Sample QC with nodejs backend
the restful service used by the IGO LIMS
Functional Observation of RNA Transcriptome Elements/Expression
cfDNA Sequencing Pipeline with UMI
Demultiplex Illumina sequencer output via DRAGEN, create fastq files and launch pipelines
Sapio LIMS customizations to workflows for IGO
