added missing pipelines #77
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pneerincx
reviewed
Sep 1, 2022
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| # - name: ngs-utils_checkSamplesheet # Unique ID required to update existing cronjob: do not modify. | ||
| # user: umcg-labgnkbh-ateambot | ||
| # machines: "{{ groups['user_interface'] | default([]) }}" | ||
| # minute: '*/5' | ||
| # disabled: true | ||
| # job: /bin/bash -c "{{ configure_env_in_cronjob }}; | ||
| # module load ngs-utils/{{ group_module_versions['umcg-labgnkbh']['ngs-utils'] }}; | ||
| # checkSamplesheet.sh -s /groups/umcg-labgnkbh/tmp07/" | ||
| # - name: NGS_Demultiplexing_demultiplexing # Unique ID required to update existing cronjob: do not modify. | ||
| # user: umcg-labgnkbh-ateambot | ||
| # machines: "{{ groups['user_interface'] | default([]) }}" | ||
| # minute: '*/5' | ||
| # disabled: true | ||
| # job: /bin/bash -c "{{ configure_env_in_cronjob }}; | ||
| # module load NGS_Automated/{{ group_module_versions['umcg-labgnkbh']['NGS_Automated'] }}-NGS_Demultiplexing-{{ group_module_versions['umcg-labgnkbh']['NGS_Demultiplexing'] }}; | ||
| # demultiplexing.sh -g umcg-labgnkbh" | ||
| # - name: NGS_Automated_moveSamplesheets # Unique ID required to update existing cronjob: do not modify. | ||
| # user: umcg-labgnkbh-ateambot | ||
| # machines: "{{ groups['chaperone'] | default([]) }}" | ||
| # minute: '*/5' | ||
| # disabled: true | ||
| # job: /bin/bash -c "{{ configure_env_in_cronjob }}; | ||
| # module load NGS_Automated/{{ group_module_versions['umcg-labgnkbh']['NGS_Automated'] }}-bare; | ||
| # moveSamplesheets.sh -g umcg-labgnkbh" | ||
| # - name: NGS_Automated_notifications # Unique ID required to update existing cronjob: do not modify. | ||
| # user: umcg-labgnkbh-dm | ||
| # machines: "{{ groups['chaperone'] | default([]) }}" | ||
| # minute: '*/10' | ||
| # disabled: true | ||
| # job: /bin/bash -c "{{ configure_env_in_cronjob }}; | ||
| # module load NGS_Automated/{{ group_module_versions['umcg-labgnkbh']['NGS_Automated'] }}-bare; | ||
| # notifications.sh -g umcg-labgnkbh -e" | ||
| # - name: NGS_Automated_copyRawDataToPrm_inhouse # Unique ID required to update existing cronjob: do not modify. | ||
| # user: umcg-labgnkbh-dm | ||
| # machines: "{{ groups['chaperone'] | default([]) }}" | ||
| # minute: '*/10' | ||
| # disabled: true | ||
| # job: /bin/bash -c "{{ configure_env_in_cronjob }}; | ||
| # module load NGS_Automated/{{ group_module_versions['umcg-labgnkbh']['NGS_Automated'] }}-bare; | ||
| # copyRawDataToPrm.sh -g umcg-labgnkbh -s porch+wingedhelix" |
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Why is this block commented out? These cronjobs were already had disabled: true
|
Staat in PR comment, die users bestaan daar (nog) niet
Op do 1 sep. 2022 16:15 schreef Pieter Neerincx ***@***.***>:
… ***@***.**** commented on this pull request.
------------------------------
In group_vars/wingedhelix_cluster/vars.yml
<#77 (comment)>
:
> +# - name: ngs-utils_checkSamplesheet # Unique ID required to update existing cronjob: do not modify.
+# user: umcg-labgnkbh-ateambot
+# machines: "{{ groups['user_interface'] | default([]) }}"
+# minute: '*/5'
+# disabled: true
+# job: /bin/bash -c "{{ configure_env_in_cronjob }};
+# module load ngs-utils/{{ group_module_versions['umcg-labgnkbh']['ngs-utils'] }};
+# checkSamplesheet.sh -s /groups/umcg-labgnkbh/tmp07/"
+# - name: NGS_Demultiplexing_demultiplexing # Unique ID required to update existing cronjob: do not modify.
+# user: umcg-labgnkbh-ateambot
+# machines: "{{ groups['user_interface'] | default([]) }}"
+# minute: '*/5'
+# disabled: true
+# job: /bin/bash -c "{{ configure_env_in_cronjob }};
+# module load NGS_Automated/{{ group_module_versions['umcg-labgnkbh']['NGS_Automated'] }}-NGS_Demultiplexing-{{ group_module_versions['umcg-labgnkbh']['NGS_Demultiplexing'] }};
+# demultiplexing.sh -g umcg-labgnkbh"
+# - name: NGS_Automated_moveSamplesheets # Unique ID required to update existing cronjob: do not modify.
+# user: umcg-labgnkbh-ateambot
+# machines: "{{ groups['chaperone'] | default([]) }}"
+# minute: '*/5'
+# disabled: true
+# job: /bin/bash -c "{{ configure_env_in_cronjob }};
+# module load NGS_Automated/{{ group_module_versions['umcg-labgnkbh']['NGS_Automated'] }}-bare;
+# moveSamplesheets.sh -g umcg-labgnkbh"
+# - name: NGS_Automated_notifications # Unique ID required to update existing cronjob: do not modify.
+# user: umcg-labgnkbh-dm
+# machines: "{{ groups['chaperone'] | default([]) }}"
+# minute: '*/10'
+# disabled: true
+# job: /bin/bash -c "{{ configure_env_in_cronjob }};
+# module load NGS_Automated/{{ group_module_versions['umcg-labgnkbh']['NGS_Automated'] }}-bare;
+# notifications.sh -g umcg-labgnkbh -e"
+# - name: NGS_Automated_copyRawDataToPrm_inhouse # Unique ID required to update existing cronjob: do not modify.
+# user: umcg-labgnkbh-dm
+# machines: "{{ groups['chaperone'] | default([]) }}"
+# minute: '*/10'
+# disabled: true
+# job: /bin/bash -c "{{ configure_env_in_cronjob }};
+# module load NGS_Automated/{{ group_module_versions['umcg-labgnkbh']['NGS_Automated'] }}-bare;
+# copyRawDataToPrm.sh -g umcg-labgnkbh -s porch+wingedhelix"
Why is this block commented out? These cronjobs were already had disabled:
true
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Reply to this email directly, view it on GitHub
<#77 (review)>,
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<https://github.com/notifications/unsubscribe-auth/AANOTKGYHZ45D6H27DSNEPLV4C26ZANCNFSM6AAAAAAQCLDFSQ>
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|
|
Missing users and groups has been fixed in rug-cit-hpc/league-of-robots#625. This was deployed, so please try again without the comments for the corresponding cronjobs. |
pneerincx
reviewed
Sep 2, 2022
| machines: "{{ groups['user_interface'] }}" }, | ||
| { group: 'umcg-atd', | ||
| lfs: 'dat07', | ||
| mode: "{{ MODE_2770_HARD }}", | ||
| owner: 'umcg-atd-dm', | ||
| subfolders: ['ConcordanceCheckOutput','ConcordanceCheckSamplesheets', 'logs', 'samplesheets', 'temp', 'trendanalysis'], | ||
| machines: "{{ groups['chaperone'] }}" }, | ||
| { group: 'umcg-atd', | ||
| lfs: 'prm07', | ||
| mode: "{{ MODE_2770_HARD }}", |
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Geen write access voor de rest van de groep op prm! Dus mode 2750.
pneerincx
reviewed
Sep 2, 2022
| machines: "{{ groups['user_interface'] }}" }, | ||
| { group: 'umcg-gsad', | ||
| lfs: 'dat07', | ||
| mode: "{{ MODE_2770_HARD }}", | ||
| owner: 'umcg-gsad-dm', | ||
| subfolders: ['DiagnosticOutput','logs','samplesheets'], | ||
| machines: "{{ groups['chaperone'] }}" }, | ||
| { group: 'umcg-gsad', | ||
| lfs: 'prm07', | ||
| mode: "{{ MODE_2770_HARD }}", |
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Suggested change
| mode: "{{ MODE_2770_HARD }}", | |
| mode: "{{ MODE_2750_HARD }}", |
pneerincx
approved these changes
Sep 5, 2022
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