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Added a "run cycle overview" to documentation (#3455)
* run cycle overview * adjust flow format * add to table of contents * code highlighting points of interest * remove highlighting * java code highlighting * fix lint error * language change. swap parse+exec for run * use back-ticks for it + describe. uppercase title. * invoked to executed * add comment, make ui-generic, swap arrows * Swap java back to js as highlighting the same
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