Whole exome and transcriptome sequencing in sporadic ALS

Analysis code for human dbGaP data set phs000747.v2.p1.

Citation: Klim JR, Williams LA, Limone F, Guerra San Juan I, Davis-Dusenbery BN, Mordes DA, Burberry A, Steinbaugh MJ, Gamage KK, Kirchner R, Moccia R, Cassel SH, Chen K, Wainger BJ, Woolf CJ, Eggan K. (2019). ALS-implicated protein TDP-43 sustains levels of STMN2, a mediator of motor neuron growth and repair. Nat Neurosci.

Name		Name	Last commit message	Last commit date
Latest commit History 10 Commits
differential_expression		differential_expression
.gitignore		.gitignore
README.md		README.md
SRR_Acc_List.txt		SRR_Acc_List.txt
SraRunTable.txt		SraRunTable.txt
bcbio-fastrnaseq.yaml		bcbio-fastrnaseq.yaml
bcbio.csv		bcbio.csv
bcbio.yaml		bcbio.yaml
bcbioRNASeq.R		bcbioRNASeq.R
bcbio_srr_files.csv		bcbio_srr_files.csv
bcbio_system.yaml		bcbio_system.yaml
bcbio_template.sh		bcbio_template.sh
fastq_cat_sra_runs_to_samples.sh		fastq_cat_sra_runs_to_samples.sh
grch37.sh		grch37.sh
sbatch_bcbio.sh		sbatch_bcbio.sh
sbatch_fastq-dump.sh		sbatch_fastq-dump.sh

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