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app_packages.html

@@ -378,7 +378,6 @@ <h2 id="toc-title">Contents</h2>
   <li><a href="#data-chapter-7" id="toc-data-chapter-7" class="nav-link" data-scroll-target="#data-chapter-7">Data (Chapter 7)</a></li>
   <li><a href="#launch-chapter-8" id="toc-launch-chapter-8" class="nav-link" data-scroll-target="#launch-chapter-8">Launch (Chapter 8)</a></li>
   <li><a href="#external-files-chapter-9" id="toc-external-files-chapter-9" class="nav-link" data-scroll-target="#external-files-chapter-9">External files (Chapter 9)</a></li>
-  <li><a href="#tests-chapter-10" id="toc-tests-chapter-10" class="nav-link" data-scroll-target="#tests-chapter-10">Tests (Chapter 10)</a></li>
   </ul></li>
   </ul>
 <div class="toc-actions"><div><i class="bi bi-github"></i></div><div class="action-links"><p><a href="https://github.com/mjfrigaard/shinyap/edit/main/app_packages.qmd" class="toc-action">Edit this page</a></p><p><a href="https://github.com/mjfrigaard/shinyap/issues/new" class="toc-action">Report an issue</a></p></div></div></nav>
@@ -514,7 +513,7 @@ <h3 class="anchored" data-anchor-id="packages-chapter-3">Packages (Chapter 3)</h
 <li><p><a href="https://github.com/mjfrigaard/moviesApp/tree/03_proj-app"><code>03_proj-app</code></a> is an ‘advanced’ package from the previous chapter</p></li>
 <li><p><a href="https://github.com/mjfrigaard/moviesApp/tree/04_description"><code>04_description</code></a> is a branch from <code>03_proj-app</code> and adds the seven mandatory <code>DESCRIPTION</code> fields.</p></li>
 <li><p><a href="https://github.com/mjfrigaard/moviesApp/tree/05_rproj"><code>05_rproj</code></a> is a branch from <code>04_description</code> and manually converts the shiny app project to a shiny app-package using the <code>.Rproj</code> file.</p></li>
-<li><p><a href="https://github.com/mjfrigaard/moviesApp/tree/06_create-package"><code>06_create-package</code></a> is a branch from <code>03_proj-app</code> and creates a package using <code>usethis::create_package()</code></p></li>
+<li><p><a href="https://github.com/mjfrigaard/moviesApp/tree/06a_create-package"><code>06a_create-package</code></a> is a branch from <code>05_rproj</code> and creates a package using <code>usethis::create_package()</code></p></li>
 </ol>
 </div>
 </div>
@@ -539,7 +538,7 @@ <h3 class="anchored" data-anchor-id="development-chapter-4">Development (Chapter
 <div style="font-size: 1.05em; color: #282b2d;">
 <p>The code for Chapter 4 (Development) is stored in the following branch:</p>
 <ol type="1">
-<li><a href="https://github.com/mjfrigaard/moviesApp/tree/06_devtools"><code>06_devtools</code></a> is a branch from the manually converted app-package in <a href="https://github.com/mjfrigaard/moviesApp/tree/05_rproj"><code>05_rproj</code></a></li>
+<li><a href="https://github.com/mjfrigaard/moviesApp/tree/06b_devtools"><code>06b_devtools</code></a> is a branch from the manually converted app-package in <a href="https://github.com/mjfrigaard/moviesApp/tree/05_rproj"><code>05_rproj</code></a></li>
 </ol>
 </div>
 </div>
@@ -563,7 +562,7 @@ <h3 class="anchored" data-anchor-id="development-chapter-4">Development (Chapter
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-1" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-lines="10" data-code-annotation="1" data-code-cell="annotated-cell-1">Always leave an empty line in the <code>DESCRIPTION</code></span>
+<span data-code-annotation="1" data-code-lines="10" data-code-cell="annotated-cell-1">Always leave an empty line in the <code>DESCRIPTION</code></span>
 </dd>
 </dl>
 </div>
@@ -590,20 +589,19 @@ <h2 class="anchored" data-anchor-id="app-packages">App-packages</h2>
 <p>The following six chapter will continue with app-package development, emphasizing developing a shiny application within a package structure.</p>
 <p>In the following chapters, we’ll be using code from the <code>moviesApp</code> repository:</p>
 <div class="callout callout-style-simple callout-note no-icon callout-titled">
-<div class="callout-header d-flex align-content-center" data-bs-toggle="collapse" data-bs-target=".callout-6-contents" aria-controls="callout-6" aria-expanded="true" aria-label="Toggle callout">
+<div class="callout-header d-flex align-content-center" data-bs-toggle="collapse" data-bs-target=".callout-6-contents" aria-controls="callout-6" aria-expanded="false" aria-label="Toggle callout">
 <div class="callout-icon-container">
 <i class="callout-icon no-icon"></i>
 </div>
 <div class="callout-title-container flex-fill">
-<span style="font-weight: bold; font-size: 1.15em;"><code>moviesApp/tree/main</code></span>
+<span style="font-weight: bold; font-size: 1.15em;"><code>moviesApp/tree/</code></span>
 </div>
 <div class="callout-btn-toggle d-inline-block border-0 py-1 ps-1 pe-0 float-end"><i class="callout-toggle"></i></div>
 </div>
-<div id="callout-6" class="callout-6-contents callout-collapse collapse show">
+<div id="callout-6" class="callout-6-contents callout-collapse collapse">
 <div class="callout-body-container callout-body">
 <div style="font-size: 1.05em; color: #282b2d;">
-<p>The code for the next section can be found in the <a href="https://github.com/mjfrigaard/moviesApp/tree/main"><code>moviesApp</code></a> repository.</p>
-<p>The <a href="https://github.com/mjfrigaard/moviesApp/tree/main"><code>main</code></a> branch of <code>moviesApp</code> is identical to the <a href="https://github.com/mjfrigaard/moviesApp/tree/06_create-package"><code>06_create-package</code></a> branch from the <code>moviesApp</code> repository from the previous section:</p>
+<p>The code for the next section can be found in the <a href="https://github.com/mjfrigaard/moviesApp/tree/06b_devtools"><code>06b_devtools</code></a> branch of <a href="https://github.com/mjfrigaard/moviesApp/"><code>moviesApp</code></a> repository.</p>
 <div class="sourceCode" id="cb2"><pre class="sourceCode bash code-with-copy"><code class="sourceCode bash"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="ex">moviesApp/</span> </span>
 <span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a>  <span class="ex">├──</span> DESCRIPTION</span>
 <span id="cb2-3"><a href="#cb2-3" aria-hidden="true" tabindex="-1"></a>  <span class="ex">├──</span> NAMESPACE</span>
@@ -696,16 +694,6 @@ <h3 class="anchored" data-anchor-id="external-files-chapter-9">External files (C
 <li><p><code>system.file()</code></p></li>
 <li><p><code>addResourcePath()</code></p></li>
 </ul>
-</section>
-<section id="tests-chapter-10" class="level3">
-<h3 class="anchored" data-anchor-id="tests-chapter-10">Tests (Chapter 10)</h3>
-<p><a href="./tests.html">Tests</a> introduces the <a href="https://testthat.r-lib.org/reference/describe.html">BDD</a> functions and how to ‘scope’ the tests in your app-package before writing any code.</p>
-<ul>
-<li><p>User specifications, features, functional requirements</p></li>
-<li><p>Test fixtures and helpers</p></li>
-<li><p>Module server function tests with <code>testServer()</code></p></li>
-<li><p>System tests with <code>shinytest2</code></p></li>
-</ul>
 
 
 </section>

comparisons.html

@@ -448,7 +448,7 @@ <h3 class="anchored" data-anchor-id="waldo"><span style="font-size: 1.05em;"><co
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-1" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-annotation="1" data-code-cell="annotated-cell-1" data-code-lines="2,3">Comparing identical objects</span>
+<span data-code-cell="annotated-cell-1" data-code-lines="2,3" data-code-annotation="1">Comparing identical objects</span>
 </dd>
 </dl>
 </div>
@@ -481,7 +481,7 @@ <h3 class="anchored" data-anchor-id="waldo"><span style="font-size: 1.05em;"><co
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-2" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-annotation="1" data-code-cell="annotated-cell-2" data-code-lines="2,3">Comparing different objects</span>
+<span data-code-cell="annotated-cell-2" data-code-lines="2,3" data-code-annotation="1">Comparing different objects</span>
 </dd>
 </dl>
 </div>

data.html

@@ -748,7 +748,7 @@ <h3 class="anchored" data-anchor-id="using-movies">Using <code>movies</code></h3
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-19" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-lines="17" data-code-annotation="1" data-code-cell="annotated-cell-19">The <code>movies</code> data from our package namespace</span>
+<span data-code-cell="annotated-cell-19" data-code-annotation="1" data-code-lines="17">The <code>movies</code> data from our package namespace</span>
 </dd>
 </dl>
 </div>

debugging.html

@@ -485,12 +485,12 @@ <h3 class="anchored" data-anchor-id="observe"><span style="font-size: 0.95em;"><
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-1" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-lines="3,11" data-code-annotation="1" data-code-cell="annotated-cell-1"><code>observe()</code> function scope<br>
+<span data-code-lines="3,11" data-code-cell="annotated-cell-1" data-code-annotation="1"><code>observe()</code> function scope<br>
 </span>
 </dd>
 <dt data-target-cell="annotated-cell-1" data-target-annotation="2">2</dt>
 <dd>
-<span data-code-lines="4" data-code-annotation="2" data-code-cell="annotated-cell-1">Call to <code>browser()</code> (called at the top of the <code>observe()</code> scope)</span>
+<span data-code-lines="4" data-code-cell="annotated-cell-1" data-code-annotation="2">Call to <code>browser()</code> (called at the top of the <code>observe()</code> scope)</span>
 </dd>
 </dl>
 </div>
@@ -581,12 +581,12 @@ <h2 class="anchored" data-anchor-id="debugging-app-functions">Debugging app func
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-6" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-lines="3,10" data-code-annotation="1" data-code-cell="annotated-cell-6">Observer scope<br>
+<span data-code-lines="3,10" data-code-cell="annotated-cell-6" data-code-annotation="1">Observer scope<br>
 </span>
 </dd>
 <dt data-target-cell="annotated-cell-6" data-target-annotation="2">2</dt>
 <dd>
-<span data-code-lines="4" data-code-annotation="2" data-code-cell="annotated-cell-6">Activate debugger</span>
+<span data-code-lines="4" data-code-cell="annotated-cell-6" data-code-annotation="2">Activate debugger</span>
 </dd>
 </dl>
 </div>
@@ -756,7 +756,7 @@ <h2 class="anchored" data-anchor-id="debugging-modules">Debugging modules</h2>
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-12" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-lines="4,9" data-code-annotation="1" data-code-cell="annotated-cell-12">Wrap <code>browser()</code> in <code>observe()</code> and place after the call to <code>moduleServer()</code></span>
+<span data-code-lines="4,9" data-code-cell="annotated-cell-12" data-code-annotation="1">Wrap <code>browser()</code> in <code>observe()</code> and place after the call to <code>moduleServer()</code></span>
 </dd>
 </dl>
 </div>
@@ -830,12 +830,12 @@ <h3 class="anchored" data-anchor-id="verify-variable-inputs">Verify variable inp
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-15" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-lines="2,10" data-code-annotation="1" data-code-cell="annotated-cell-15">Variable inputs (from <code>selected_vars</code>)<br>
+<span data-code-lines="2,10" data-code-cell="annotated-cell-15" data-code-annotation="1">Variable inputs (from <code>selected_vars</code>)<br>
 </span>
 </dd>
 <dt data-target-cell="annotated-cell-15" data-target-annotation="2">2</dt>
 <dd>
-<span data-code-lines="1,11" data-code-annotation="2" data-code-cell="annotated-cell-15"><code>inputs()</code> for <code>scatter_plot()</code></span>
+<span data-code-lines="1,11" data-code-cell="annotated-cell-15" data-code-annotation="2"><code>inputs()</code> for <code>scatter_plot()</code></span>
 </dd>
 </dl>
 </div>
@@ -904,12 +904,12 @@ <h3 class="anchored" data-anchor-id="verify-graph">Verify graph</h3>
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-16" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-lines="2,6" data-code-annotation="1" data-code-cell="annotated-cell-16">Observe scope<br>
+<span data-code-lines="2,6" data-code-cell="annotated-cell-16" data-code-annotation="1">Observe scope<br>
 </span>
 </dd>
 <dt data-target-cell="annotated-cell-16" data-target-annotation="2">2</dt>
 <dd>
-<span data-code-lines="3" data-code-annotation="2" data-code-cell="annotated-cell-16">Call to <code>browser()</code></span>
+<span data-code-lines="3" data-code-cell="annotated-cell-16" data-code-annotation="2">Call to <code>browser()</code></span>
 </dd>
 </dl>
 </div>
@@ -992,7 +992,7 @@ <h6 class="anchored" data-anchor-id="section-3"></h6>
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-2" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-lines="8" data-code-annotation="1" data-code-cell="annotated-cell-2">Location of debugger in utility function</span>
+<span data-code-lines="8" data-code-cell="annotated-cell-2" data-code-annotation="1">Location of debugger in utility function</span>
 </dd>
 </dl>
 </div>
@@ -1050,17 +1050,17 @@ <h2 class="anchored" data-anchor-id="exploring-code">Exploring code</h2>
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-19" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-lines="4,13" data-code-annotation="1" data-code-cell="annotated-cell-19">Observer scope<br>
+<span data-code-lines="4,13" data-code-cell="annotated-cell-19" data-code-annotation="1">Observer scope<br>
 </span>
 </dd>
 <dt data-target-cell="annotated-cell-19" data-target-annotation="2">2</dt>
 <dd>
-<span data-code-lines="5" data-code-annotation="2" data-code-cell="annotated-cell-19">Call to <code>browser()</code><br>
+<span data-code-lines="5" data-code-cell="annotated-cell-19" data-code-annotation="2">Call to <code>browser()</code><br>
 </span>
 </dd>
 <dt data-target-cell="annotated-cell-19" data-target-annotation="3">3</dt>
 <dd>
-<span data-code-lines="9,10,11,12" data-code-annotation="3" data-code-cell="annotated-cell-19">Additional module code omitted</span>
+<span data-code-lines="9,10,11,12" data-code-cell="annotated-cell-19" data-code-annotation="3">Additional module code omitted</span>
 </dd>
 </dl>
 </div>
@@ -1275,12 +1275,12 @@ <h2 class="anchored" data-anchor-id="debugging-apps">Debugging apps</h2>
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-22" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-lines="1" data-code-annotation="1" data-code-cell="annotated-cell-22">Optional label<br>
+<span data-code-lines="1" data-code-cell="annotated-cell-22" data-code-annotation="1">Optional label<br>
 </span>
 </dd>
 <dt data-target-cell="annotated-cell-22" data-target-annotation="2">2</dt>
 <dd>
-<span data-code-lines="2" data-code-annotation="2" data-code-cell="annotated-cell-22">Include the <code>ns()</code> for the <code>inputId</code></span>
+<span data-code-lines="2" data-code-cell="annotated-cell-22" data-code-annotation="2">Include the <code>ns()</code> for the <code>inputId</code></span>
 </dd>
 </dl>
 </div>
@@ -1301,17 +1301,17 @@ <h2 class="anchored" data-anchor-id="debugging-apps">Debugging apps</h2>
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-23" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-lines="3,6" data-code-annotation="1" data-code-cell="annotated-cell-23">Collect reactive values in module<br>
+<span data-code-lines="3,6" data-code-cell="annotated-cell-23" data-code-annotation="1">Collect reactive values in module<br>
 </span>
 </dd>
 <dt data-target-cell="annotated-cell-23" data-target-annotation="2">2</dt>
 <dd>
-<span data-code-lines="2,7" data-code-annotation="2" data-code-cell="annotated-cell-23">Print these values to the UI<br>
+<span data-code-lines="2,7" data-code-cell="annotated-cell-23" data-code-annotation="2">Print these values to the UI<br>
 </span>
 </dd>
 <dt data-target-cell="annotated-cell-23" data-target-annotation="3">3</dt>
 <dd>
-<span data-code-lines="5" data-code-annotation="3" data-code-cell="annotated-cell-23">Include all reactive objects</span>
+<span data-code-lines="5" data-code-cell="annotated-cell-23" data-code-annotation="3">Include all reactive objects</span>
 </dd>
 </dl>
 </div>

dependencies.html

@@ -533,7 +533,7 @@ <h2 class="anchored" data-anchor-id="moviesapp"><span style="font-size: 1.05em">
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-1" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-cell="annotated-cell-1" data-code-annotation="1" data-code-lines="13,21">The <code>man</code> folder now contains the help (<code>.Rd</code>) files for the functions in <code>R/</code></span>
+<span data-code-lines="13,21" data-code-annotation="1" data-code-cell="annotated-cell-1">The <code>man</code> folder now contains the help (<code>.Rd</code>) files for the functions in <code>R/</code></span>
 </dd>
 </dl>
 </div>

development.html

@@ -824,7 +824,7 @@ <h6 class="anchored" data-anchor-id="section-3"></h6>
 <p><img src="img/new_branch_ico.png" class="img-fluid figure-img" style="width:75.0%"></p>
 </figure>
 </div>
-<p>This section’s code is in the <a href="https://github.com/mjfrigaard/moviesApp/tree/06_devtools"><code>06_devtools</code></a> branch of <a href="https://github.com/mjfrigaard/moviesApp"><code>moviesApp</code></a>.</p>
+<p>This section’s code is in the <a href="https://github.com/mjfrigaard/moviesApp/tree/06b_devtools"><code>06b_devtools</code></a> branch of <a href="https://github.com/mjfrigaard/moviesApp"><code>moviesApp</code></a>.</p>
 </div></div></section>
 <section id="check" class="level3">
 <h3 class="anchored" data-anchor-id="check"><span style="font-weight: bold;">Check?</span></h3>

document.html

@@ -572,7 +572,7 @@ <h3 class="anchored" data-anchor-id="markdown-true"><span style="font-size: 0.90
 <dl class="code-annotation-container-hidden code-annotation-container-grid">
 <dt data-target-cell="annotated-cell-3" data-target-annotation="1">1</dt>
 <dd>
-<span data-code-cell="annotated-cell-3" data-code-annotation="1" data-code-lines="13">Always leave at least one empty final line in your <code>DESCRIPTION</code> file.</span>
+<span data-code-annotation="1" data-code-lines="13" data-code-cell="annotated-cell-3">Always leave at least one empty final line in your <code>DESCRIPTION</code> file.</span>
 </dd>
 </dl>
 </div>