NEAT: an efficient network enrichment analysis test

What is neat?

neat is the R package that implements NEAT, the Network Enrichment Analysis Test which is presented in Signorelli, M., Vinciotti, V., Wit, E. C. (2016). NEAT: an efficient network enrichment analysis test. BMC Bioinformatics, 17:352. You can read and download the paper (with open access) here: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1203-6

About this repository

This repository contains the data and code to reproduce the simulations presented in Signorelli et al. (2016). For each simulation, a workspace (file .Rdata) and a script (file .R) are available.

How to download neat

neat is an R package that can be downloaded from CRAN. This can be done in R through the command

install.packages('neat')

Further information

More information on neat can be found at the following pages:

• CRAN package page;
• my personal website;
• vignette that illustrates how to use the R package's functions.

A read-only mirror of the package's source code is available at https://github.com/cran/neat.