Remove bug where I had plotted wrong parameters as maximum likelihood…

… (due to removal of burn in samples from the plots)
mirams · Mar 1, 2017 · 9c0429a · 9c0429a
1 parent 88f251a
commit 9c0429a
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Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/Figures/figure_3/figure_3.pdf b/Figures/figure_3/figure_3.pdf
diff --git a/Figures/figure_3/plot_figure_3_results.py b/Figures/figure_3/plot_figure_3_results.py
@@ -160,7 +160,8 @@
 data = numpy.loadtxt('figure_3_c/MCMC_likelihood_and_samples.txt', skiprows=0)
 likelihoods = data[:,0]
 max_likelihood_index = numpy.argmax(likelihoods)
-print('Maximum likelihood at index',max_likelihood_index)
+print('Maximum likelihood at index ', max_likelihood_index)
+max_likelihood_values = data[max_likelihood_index,:]
 
 # Remove 'burn in'
 data = data[50001:,:]
@@ -243,7 +244,8 @@
     for label in ax.get_xticklabels():
         label.set_rotation(305)
         label.set_horizontalalignment("left")
-    ax.plot(data[max_likelihood_index,i+1], 0, 'kx', markersize=10, markeredgewidth=3, clip_on=False)
+    print('Max posterior density for P',i+1,' is at', max_likelihood_values[i+1])
+    ax.plot(max_likelihood_values[i+1], 0, 'kx', markersize=10, markeredgewidth=3, clip_on=False)
     if i==8:
         ax.get_xaxis().set_label_coords(+0.5,0.93)
     else: