resolved conflicts for 0.2 release (#396)

* V00.01.00003 release (#356)

* cleaning up files which are no longer needed

* fixes after removing forking workflow (#322)

* PR to resolve merge issues

* updated main build as well

* added ability to read in git branch name directly

* manually updated the other files

* fixed number of classes for main build tests (#327)

* fixed number of classes for main build tests

* corrected DATASET.ROOT in builds

* added dev build script

* Fixes for development inside the docker container (#335)

* Fix the mound command for the HRNet pretrained model in the docker readme

* Properly catch InvalidGitRepository exception

* make repo paths consistent with non-docker runs -- this way configs paths do not need to be changed

* Properly catch InvalidGitRepository exception in train.py

* Readme update (#337)

* README updates

* Removing user specific path from config

Authored-by: Fatemeh Zamanian <Fatemeh.Zamanian@microsoft.com>

* Fixing #324 and #325 (#338)

* update colormap to a non-discrete one -- fixes #324

* fix mask_to_disk to normalize by n_classes

* changes to test.py

* Updating data.py

* bug fix

* increased timeout time for main_build

* retrigger build

* retrigger the build

* increase timeout

* fixes 318 (#339)

* finished 318

* increased checkerboard test timeout

* fix 333 (#340)

* added label correction to train gradient

* changing the gradient data generator to take inline/crossline argument conssistent with the patchloader

* changing variable name to be more descriptive


Co-authored-by: maxkazmsft <maxkaz@microsoft.com>

* bug fix to model predictions (#345)

* replace hrnet with seresnet in experiments - provides stable default model (#343)

Co-authored-by: yalaudah <yazeed.alaudah@microsoft.com>
Co-authored-by: Fatemeh <fazamani@microsoft.com>

* typos

Co-authored-by: yalaudah <yazeed.alaudah@microsoft.com>
Co-authored-by: Fatemeh <fazamani@microsoft.com>

README.md

@@ -386,4 +386,3 @@ which will indicate that anaconda folder is `__/anaconda__`. We'll refer to this
   5. Navigate back to the Virtual Machine view in Step 2 and click the Start button to start the virtual machine.
 
 </details>
-

environment/anaconda/local/environment.yml

@@ -39,5 +39,3 @@ dependencies:
     - jupytext==1.3.0
     - validators
     - pyyaml
-
-

scripts/dev_build.py

@@ -12,6 +12,8 @@
 import yaml
 import subprocess
 
+from datetime import datetime
+
 np.set_printoptions(linewidth=200)
 import logging
 
@@ -27,16 +29,14 @@
 mypath = os.path.dirname(myname)
 myname = os.path.basename(myname)
 
-
 def main(args):
     """
 
     Runs main build jobs on your local VM. By default setup job is not run,
     add --setup to run it (destroys existing environment and creates a new one, along with all the data)
 
     """
-    from datetime import datetime
-
+
     beg = datetime.now()
 
     logging.info("loading data")