fixed number of classes for main build tests (#327)

* fixed number of classes for main build tests

* corrected DATASET.ROOT in builds

* added dev build script

scripts/dev_build.py

@@ -0,0 +1,124 @@
+#!/usr/bin/env python3
+""" Please see the def main() function for code description."""
+
+""" libraries """
+
+import numpy as np
+import os
+import sys
+import yaml
+import subprocess
+
+np.set_printoptions(linewidth=200)
+import logging
+
+# toggle to WARNING when running in production, or use CLI
+logging.getLogger().setLevel(logging.DEBUG)
+# logging.getLogger().setLevel(logging.WARNING)
+import argparse
+
+parser = argparse.ArgumentParser()
+
+""" useful information when running from a GIT folder."""
+myname = os.path.realpath(__file__)
+mypath = os.path.dirname(myname)
+myname = os.path.basename(myname)
+
+def main(args):
+    """
+
+    Runs main build jobs on your local VM. By default setup job is not run,
+    add --setup to run it (destroys existing environment and creates a new one, along with all the data)
+
+    """
+
+    logging.info("loading data")
+
+    with open(args.file) as file:
+
+        list = yaml.load(file, Loader=yaml.FullLoader)
+        logging.info(f"Loaded {file}")
+
+        # run single job
+        job_names = [x["job"] for x in list["jobs"]] if not args.job else args.job.split(',')
+
+        if not args.setup and "setup" in job_names:
+            job_names.remove("setup")
+
+        job_list = list["jobs"]
+
+        # copy existing environment
+        current_env = os.environ.copy()
+        # modify for conda to work
+        # TODO: not sure why on DS VM this does not get picked up from the standard environment
+        current_env["PATH"] = PATH_PREFIX+":"+current_env["PATH"]
+
+        for job in job_list:
+            job_name = job["job"]
+            if job_name not in job_names:
+                continue
+
+            bash = job["steps"][0]["bash"]
+
+            logging.info(f"Running job {job_name}")
+
+            try:
+                completed = subprocess.run(
+                    # 'set -e && source activate seismic-interpretation && which python && pytest --durations=0 cv_lib/tests/',
+                    bash,
+                    check=True,
+                    shell=True,
+                    stdout=subprocess.PIPE,
+                    stderr=subprocess.STDOUT,
+                    executable=current_env["SHELL"],
+                    env=current_env,
+                    cwd=os.getcwd()
+                )
+            except subprocess.CalledProcessError as err:
+                logging.info(f'ERROR: \n{err}')
+                decoded_stdout = err.stdout.decode('utf-8')
+                log_file = "dev_build.latest_error.log"
+                logging.info(f"Have {len(err.stdout)} output bytes in {log_file}")
+                with open(log_file, 'w') as log_file:
+                    log_file.write(decoded_stdout)
+                sys.exit()
+            else:
+                logging.info(f"returncode: {completed.returncode}")
+                logging.info(f"Have {len(completed.stdout)} output bytes: \n{completed.stdout.decode('utf-8')}")
+
+    logging.info(f"Everything ran! You can try running the same jobs {job_names} on the build VM now")
+
+""" GLOBAL VARIABLES """
+PATH_PREFIX = "/data/anaconda/envs/seismic-interpretation/bin:/data/anaconda/bin"
+
+parser.add_argument(
+    "--file", help="Which yaml file you'd like to read which specifies build info", type=str, required=True
+)
+parser.add_argument(
+    "--job", help="CVS list of the job names which you would like to run", type=str, default=None, required=False
+)
+parser.add_argument("--setup", help="Add setup job", action="store_true")
+
+""" main wrapper with profiler """
+if __name__ == "__main__":
+    main(parser.parse_args())
+
+# pretty printing of the stack
+"""
+  try:
+    logging.info('before main')
+    main(parser.parse_args())
+    logging.info('after main')
+  except:
+    for frame in traceback.extract_tb(sys.exc_info()[2]):
+      fname,lineno,fn,text = frame
+      print ("Error in %s on line %d" % (fname, lineno))
+"""
+# optionally enable profiling information
+#  import cProfile
+#  name = <insert_name_here>
+#  cProfile.run('main.run()', name + '.prof')
+#  import pstats
+#  p = pstats.Stats(name + '.prof')
+#  p.sort_stats('cumulative').print_stats(10)
+#  p.sort_stats('time').print_stats()

tests/cicd/main_build.yml

@@ -188,9 +188,9 @@ jobs:
       [[ -z ${model_dir} ]] && model_dir=$(ls -td output/$(git rev-parse --abbrev-ref HEAD)/*/patch_deconvnet/no_depth/* | head -1)
       model=$(ls -t ${model_dir}/*.pth | head -1)
       # try running the test script
-      { python test.py 'DATASET.ROOT' '/data/test/gradient/data' \
+      { python test.py 'DATASET.ROOT' '/home/alfred/data_dynamic/checkerboard/data' \
                        'TEST.SPLIT' 'Both' 'TRAIN.MODEL_DIR' 'no_depth' \
-                       'DATASET.NUM_CLASSES' 7 'DATASET.CLASS_WEIGHTS' '[1.0, 1.0,1.0, 1.0,1.0, 1.0,1.0]' \
+                       'DATASET.NUM_CLASSES' 2 'DATASET.CLASS_WEIGHTS' '[1.0, 1.0]' \
                        'TEST.MODEL_PATH' ${model} \
                        'WORKERS' 1 \
                        --cfg=configs/patch_deconvnet.yaml --debug ; echo "$?" > "$dir/$BASHPID"; }
@@ -203,9 +203,9 @@ jobs:
       [[ -z ${model_dir} ]] && model_dir=$(ls -td output/$(git rev-parse --abbrev-ref HEAD)/*/unet/section_depth/* | head -1)
       model=$(ls -t ${model_dir}/*.pth | head -1)
       # try running the test script
-      { python test.py 'DATASET.ROOT' '/data/test/binary/data' \
+      { python test.py 'DATASET.ROOT' '/home/alfred/data_dynamic/checkerboard/data' \
                        'TEST.SPLIT' 'Both' 'TRAIN.MODEL_DIR' 'section_depth' \
-                       'DATASET.NUM_CLASSES' 7 'DATASET.CLASS_WEIGHTS' '[1.0, 1.0,1.0, 1.0,1.0, 1.0,1.0]' \
+                       'DATASET.NUM_CLASSES' 2 'DATASET.CLASS_WEIGHTS' '[1.0, 1.0]' \
                        'TEST.MODEL_PATH' ${model} \
                        'WORKERS' 1 \
                        --cfg=configs/unet.yaml --debug ; echo "$?" > "$dir/$BASHPID"; }