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microbiome · Oct 9, 2024 · aa59828 · aa59828
1 parent fa78ac8
commit aa59828
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/R/plotAbundance.R b/R/plotAbundance.R
@@ -222,6 +222,9 @@ setMethod("plotAbundance", signature = c("SummarizedExperiment"), function(
             "the names.\nThe following names are not allowed: '",
             paste0(not_allowed, collapse = "', '"), "'", call. = FALSE)
     }
+    # Leave order.col.by out of the comparison, if it specifies a feature
+    order.col.by <- if(order.col.by %in% colnames(colData(x))) order.col.by else
+        NULL
     all_vars <- unique(c(order.col.by, col.var))
     if( sum(colnames(colData(x)) %in% all_vars) != length(all_vars) ){
         stop("colData(x) must have unique colnames.", call. = FALSE)