Fix build on Linux

Add GHA tests

.github/workflows/linux.yaml

@@ -0,0 +1,66 @@
+# Test build on various Linux distros
+
+on:
+  workflow_dispatch:
+    inputs:
+      ubuntu-2204:
+        description: "Ubuntu 22.04"
+        required: true
+        type: choice
+        options:
+        - 'yes'
+        - 'no'
+        default: 'yes'
+      debian-12:
+        description: "Debian 12"
+        required: true
+        type: choice
+        options:
+        - 'yes'
+        - 'no'
+        default: 'yes'
+      fedora-38:
+        description: "Fedora 38"
+        required: true
+        type: choice
+        options:
+        - 'yes'
+        - 'no'
+        default: 'yes'
+
+jobs:
+  ubuntu-22.04:
+    if: ${{ github.event.inputs.ubuntu-2204 == '' || github.event.inputs.ubuntu-2204 == 'yes' }}
+    runs-on: ubuntu-latest
+    name: Ubuntu 22.04
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v3
+    - name: Build in Docker
+      run: |
+        docker build -f tools/build/linux/Dockerfile-ubuntu-22.04 -t bqs:ubuntu2204 .
+        docker run bqs:ubuntu2204 R -q -e 'library(bigrquerystorage)'
+
+  debian-12:
+    if: ${{ github.event.inputs.debian-12 == '' || github.event.inputs.debian-12 == 'yes' }}
+    runs-on: ubuntu-latest
+    name: Debian 12
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v3
+    - name: Build in Docker
+      run: |
+        docker build -f tools/build/linux/Dockerfile-debian-12 -t bqs:debian12 .
+        docker run bqs:debian12 R -q -e 'library(bigrquerystorage)'
+
+  fedora-38:
+    if: ${{ github.event.inputs.fedora-38 == '' || github.event.inputs.fedora-38 == 'yes' }}
+    runs-on: ubuntu-latest
+    name: Fedora 38
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v3
+    - name: Build in Docker
+      run: |
+        docker build -f tools/build/linux/Dockerfile-fedora-38 -t bqs:fedora-38 .
+        docker run bqs:fedora-38 R -q -e 'library(bigrquerystorage)'

.gitignore

@@ -9,3 +9,4 @@ src/google/
 *.so
 *.dll
 .httr-oauth
+/src/Makevars

inst/include/bigrquerystorage.h

@@ -0,0 +1 @@
+#include <cstdint>

src/RcppExports.cpp

@@ -1,6 +1,7 @@
 // Generated by using Rcpp::compileAttributes() -> do not edit by hand
 // Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393
 
+#include "../inst/include/bigrquerystorage.h"
 #include <Rcpp.h>
 
 using namespace Rcpp;

tools/build/linux/Dockerfile-debian-12

@@ -0,0 +1,41 @@
+# -*- Dockerfile -*-
+
+FROM debian:12
+
+# -------------------------------------------------------------------------
+# This is going to use P3M on x86_64
+COPY tools/build/linux/rig.gpg /etc/apt/trusted.gpg.d/rig.gpg
+RUN echo "deb http://rig.r-pkg.org/deb rig main" > \
+        /etc/apt/sources.list.d/rig.list && \
+    export DEBIAN_FRONTEND=noninteractive && \
+    apt-get update -y && \
+    apt-get install -y r-rig && \
+    rig add release
+
+# -------------------------------------------------------------------------
+# FIXME: We don't need this once grpc is in the system requirements db
+RUN apt-get install -y libprotobuf-dev protobuf-compiler-grpc \
+                       libgrpc++-dev libc-ares-dev \
+                       libre2-dev pkg-config
+
+# -------------------------------------------------------------------------
+# Only copy DESCRIPTION, so Docker can cache the dependency install
+RUN mkdir /root/bigrquerystorage
+COPY DESCRIPTION /root/bigrquerystorage/
+WORKDIR /root/bigrquerystorage
+# No upgrade, to always install binary packages, in case P3M is behind
+RUN R -q -e 'pak::local_install_deps(upgrade = FALSE)'
+
+# -------------------------------------------------------------------------
+# Call R CMD build first, so we get rid of Makevars, .o, .so, etc.
+# Change file ownership, otherwise git complains
+# Clean up thoroughly, in case the cleanup script is not perfect.
+RUN apt-get install -y git
+COPY . /root/bigrquerystorage
+RUN chown root:root -R .
+RUN git clean -fdx .
+
+# -------------------------------------------------------------------------
+WORKDIR /root
+RUN R CMD build bigrquerystorage
+RUN R CMD INSTALL bigrquerystorage_*.tar.gz

tools/build/linux/Dockerfile-fedora-38

@@ -0,0 +1,36 @@
+# -*- Dockerfile -*-
+
+FROM fedora:38
+
+# -------------------------------------------------------------------------
+RUN yum install -y \
+        https://github.com/r-lib/rig/releases/download/latest/r-rig-latest-1.$(arch).rpm && \
+    rig add devel
+
+# -------------------------------------------------------------------------
+# FIXME: We don't need this once grpc is in the system requirements db
+RUN dnf install -y protobuf-devel protobuf-compiler \
+                   grpc-devel c-ares-devel \
+                   re2-devel pkgconf
+
+# -------------------------------------------------------------------------
+# Only copy DESCRIPTION, so Docker can cache the dependency install
+RUN mkdir /root/bigrquerystorage
+COPY DESCRIPTION /root/bigrquerystorage/
+WORKDIR /root/bigrquerystorage
+# No upgrade, to always install binary packages, in case P3M is behind
+RUN R -q -e 'pak::local_install_deps(upgrade = FALSE)'
+
+# -------------------------------------------------------------------------
+# Call R CMD build first, so we get rid of Makevars, .o, .so, etc.
+# Change file ownership, otherwise git complains
+# Clean up thoroughly, in case the cleanup script is not perfect.
+RUN dnf install -y git
+COPY . /root/bigrquerystorage
+RUN chown root:root -R .
+RUN git clean -fdx .
+
+# -------------------------------------------------------------------------
+WORKDIR /root
+RUN R CMD build bigrquerystorage
+RUN R CMD INSTALL bigrquerystorage_*.tar.gz

tools/build/linux/Dockerfile-ubuntu-22.04

@@ -0,0 +1,41 @@
+# -*- Dockerfile -*-
+
+FROM ubuntu:22.04
+
+# -------------------------------------------------------------------------
+# This is going to use P3M on x86_64
+COPY tools/build/linux/rig.gpg /etc/apt/trusted.gpg.d/rig.gpg
+RUN echo "deb http://rig.r-pkg.org/deb rig main" > \
+        /etc/apt/sources.list.d/rig.list && \
+    export DEBIAN_FRONTEND=noninteractive && \
+    apt-get update -y && \
+    apt-get install -y r-rig && \
+    rig add release
+
+# -------------------------------------------------------------------------
+# FIXME: We don't need this once grpc is in the system requirements db
+RUN apt-get install -y libprotobuf-dev protobuf-compiler-grpc \
+                       libgrpc++-dev libc-ares-dev libre2-dev \
+                       pkg-config
+
+# -------------------------------------------------------------------------
+# Only copy DESCRIPTION first, so Docker can cache the dependency install
+RUN mkdir /root/bigrquerystorage
+COPY DESCRIPTION /root/bigrquerystorage/
+WORKDIR /root/bigrquerystorage
+# No upgrade, to always install binary packages, in case P3M is behind
+RUN R -q -e 'pak::local_install_deps(upgrade = FALSE)'
+
+# -------------------------------------------------------------------------
+# Call R CMD build first, so we get rid of Makevars, .o, .so, etc.
+# Change file ownership, otherwise git complains
+# Clean up thoroughly, in case the cleanup script is not perfect.
+RUN apt-get install -y git
+COPY . /root/bigrquerystorage
+RUN chown root:root -R .
+RUN git clean -fdx .
+
+# -------------------------------------------------------------------------
+WORKDIR /root
+RUN R CMD build bigrquerystorage
+RUN R CMD INSTALL bigrquerystorage_*.tar.gz

tools/config/configure.R

@@ -164,7 +164,7 @@ if (mac) {
 pkg_sources <- sort(dir("./src", ".cpp$|.c$"), decreasing = TRUE)
 
 # linker libraries
-linker_libs <- system(sprintf("%s --libs protobuf grpc++ openssl", pkg_config), intern = TRUE)
+linker_libs <- system(sprintf("%s --libs protobuf grpc++", pkg_config), intern = TRUE)
 
 # abseil no longer contains a dynamic_annotations library. brew install
 # separatly, from Abseil LTS 20200923, Patch 1
@@ -179,8 +179,6 @@ if (mac) {
 # some windows lib needs to be added manually for building with static openssl
 if (isTRUE(win)) {
 	linker_libs <- paste(linker_libs, "-lcrypt32 -lws2_32 -limagehlp")
-} else {
-	linker_libs <- paste(linker_libs, "-lupb_collections_lib -lupb_json_lib -lupb_textformat_lib -lupb -lutf8_range_lib -lre2 -lcares -laddress_sorting -lsystemd")
 }
 
 # compiler flags