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Error when running overviewPerIndividualQC function #16
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I will look into the differences in plots between vignettes and the sample data. I updated the data at some point and might have not recompiled the vignettes. Could you try downloading the latest github version of plinkQC (0.2.3) via: devttools::install_github("HannahVMeyer/plinkQC") and see if the plotting works and the error remains? Thank you |
I followed your instructions in another computer and right now I get the following error:
I do not know if this error is due to executing this in another computer or because of the different installation. I will check it tomorrow... However, now when running:
I obtain the plot.
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Thanks for following up on this and checking. I found the issue now (missing stringsAsFactors=FALSE). I added it on the dev branch, would you mind downloading the dev-version with devtools::install_github("HannahVMeyer/plinkQC", ref="dev") Thanks! |
Now it works!!! |
Describe the bug
While following your pdf (19/06/2019) when I run all the commands in the document for the demo data you provide, I get the following error:
The first plots (those generated with fail_individuals) are OK but the coordinates for both axis (x & y) shown for the right plot shown in "Relatedness estimated as pairwise IBD (PI_HAT) are not exactly the same than the ones shown in your tutorial.
Also, when running
No error is given but no plot is shown.
I am using plink_1.9_20190617.
Am I doing something wrong?
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