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Separate enumeration from paragraph to avoid it being inlined in the …
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aeisenbarth committed Feb 6, 2024
1 parent 25314ab commit c9e9b91
Showing 1 changed file with 4 additions and 3 deletions.
7 changes: 4 additions & 3 deletions metaspace_converter/colocalization.py
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Expand Up @@ -20,9 +20,10 @@ def coloc_ml_preprocessing(
In the publication, the authors evaluated colocalization metrics and preprocessing approaches.
They found the best performance for
1) median filtering of ion images with a (3, 3) kernel size and
2) quantile thresholding at 50%, meaning all pixels with intensities below the 50%
quantile set to 0.
1. median filtering of ion images with a (3, 3) kernel size and
2. quantile thresholding at 50%, meaning all pixels with intensities below the 50%
quantile set to 0.
This function performs the same preprocessing steps.
Recommended for call before running the ``colocalization`` function.
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