Tests

Fix duplicated fasta paths #32

	name: Tests

	on:
	push:
	branches:
	- main
	paths-ignore:
	- "docs/**"
	- "*.md"
	pull_request:
	paths-ignore:
	- "docs/**"
	- "*.md"


	permissions:
	contents: read

	jobs:
	tests:
	name: "Python ${{ matrix.python-version }} on ${{ matrix.os }}"
	runs-on: ${{ matrix.os }}

	defaults:
	run:
	shell: bash -el {0}

	strategy:
	fail-fast: false
	matrix:
	os: [macos-13, ubuntu-latest]
	python-version: ["3.12"]

	steps:
	- uses: "actions/checkout@v4"
	with:
	fetch-depth: 0

	- name: Setup conda env
	uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: true
	miniforge-version: "latest"
	miniforge-variant: Mambaforge
	use-mamba: true
	mamba-version: "*"
	channels: conda-forge,bioconda,defaults
	channel-priority: strict
	activate-environment: mess
	python-version: ${{ matrix.python-version }}
	auto-activate-base: false

	- name: "Test and generate coverage report on ${{ matrix.os }} for Python ${{ matrix.python-version }}"
	run: \|
	python -m pip install --upgrade pip
	python -m pip install pytest coverage
	python -m pip install .
	coverage run -m pytest

Provide feedback