Merge pull request #182 from medema-group/hotfix/query #696
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| name: CI/CD | |
| on: | |
| push: | |
| branches: | |
| - dev | |
| - feature/* | |
| pull_request: | |
| branches: | |
| - master | |
| - dev | |
| jobs: | |
| run_pytest: | |
| runs-on: ubuntu-latest | |
| if: ${{ !contains(github.event.head_commit.message, 'docs') && !contains(github.event.head_commit.message, 'documentation') }} | |
| timeout-minutes: 15 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Set up mamba environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: '1.3.1-0' | |
| environment-file: environment.yml | |
| environment-name: BiG-SCAPE | |
| init-shell: bash | |
| generate-run-shell: true | |
| - name: Install dependencies | |
| shell: micromamba-shell {0} | |
| run: | | |
| python -m pip install pytest | |
| - name: Test with Pytest | |
| shell: micromamba-shell {0} | |
| run: | | |
| pytest | |
| generate_coverage: | |
| runs-on: ubuntu-latest | |
| if: ${{ !contains(github.event.head_commit.message, 'docs') && !contains(github.event.head_commit.message, 'documentation') }} | |
| timeout-minutes: 15 | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Set up mamba environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: '1.3.1-0' | |
| environment-file: environment.yml | |
| environment-name: BiG-SCAPE | |
| init-shell: bash | |
| generate-run-shell: true | |
| - name: Install dependencies | |
| shell: micromamba-shell {0} | |
| run: | | |
| python -m pip install pytest coverage coverage-badge | |
| - name: Test with Pytest | |
| shell: micromamba-shell {0} | |
| run: | | |
| coverage run -m pytest | |
| coverage report | |
| mkdir badges | |
| coverage-badge -o badges/coverage.svg | |
| - name: Upload badges folder | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: badges | |
| destination_dir: badges | |
| keep_files: true | |
| run_pylint: | |
| runs-on: ubuntu-latest | |
| if: ${{ !contains(github.event.head_commit.message, 'docs') && !contains(github.event.head_commit.message, 'documentation') }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Set up python | |
| uses: actions/setup-python@main | |
| with: | |
| python-version: "3.9" | |
| - name: Install dependencies | |
| shell: bash | |
| run: python -m pip install pylint anybadge | |
| - name: Run pylint | |
| shell: bash | |
| run: | | |
| score=$(pylint bigscape.py --exit-zero | grep 'rated at' | sed -r 's/^.*at ([0-9]+\.[0-9]+).*$/\1/') | |
| echo $score | |
| mkdir badges | |
| rm -f badges/pylint.svg | |
| anybadge -l pylint -v $score -f badges/pylint.svg 2=red 4=orange 8=yellow 10=green | |
| - name: Save badge to cache | |
| uses: actions/cache/save@v3 | |
| with: | |
| path: badges | |
| key: cache-${{ github.run_id }}-${{ github.run_attempt }} | |
| - name: Upload badges folder | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: badges | |
| destination_dir: badges | |
| keep_files: true | |
| # upload_badges: | |
| # runs-on: ubuntu-latest | |
| # if: ${{ !contains(github.event.head_commit.message, 'docs') && !contains(github.event.head_commit.message, 'documentation') }} | |
| # needs: | |
| # - run_pytest | |
| # - run_pylint | |
| # steps: | |
| # - name: Setup cache | |
| # uses: actions/cache/restore@v3 | |
| # with: | |
| # path: badges | |
| # key: cache-${{ github.run_id }}-${{ github.run_attempt }} | |
| # - name: Check cache hit | |
| # if: steps.cache.outputs.cache-hit != 'true' | |
| # run: | | |
| # Could not find cache | |
| # exit 1 | |
| # - name: LS badges dir | |
| # shell: bash | |
| # run: | | |
| # ls -l | |
| # ls -l badges | |
| # - name: Upload badges folder | |
| # uses: peaceiris/actions-gh-pages@v3 | |
| # with: | |
| # github_token: ${{ secrets.GITHUB_TOKEN }} | |
| # publish_dir: badges | |
| # destination_dir: badges |