fixing pytest

mazzalab · Nov 16, 2024 · 000f25f · 000f25f
1 parent 45322b5
commit 000f25f
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Showing 4 changed files with 32 additions and 13 deletions.
diff --git a/.gitignore b/.gitignore
@@ -63,19 +63,6 @@ coverage.xml
 *.mo
 *.pot
 
-# Django stuff:
-*.log
-local_settings.py
-db.sqlite3
-db.sqlite3-journal
-
-# Flask stuff:
-instance/
-.webassets-cache
-
-# Scrapy stuff:
-.scrapy
-
 # Sphinx documentation
 docs/_build/
 

diff --git a/tests/testdata/bad_test.log b/tests/testdata/bad_test.log
@@ -0,0 +1,10 @@
+FASTQWIPER SUMMARY:
+
+Total lines: 60
+Well-formed lines: 16 (26.67%)
+Clean reads: 4Bad headers or misplaced lines: 10 (16.67%) of which 4 fixed
+BAD SEQ lines: 2 (3.33%)
+BAD '+' lines: 2 (3.33%)
+BAD QUAL lines: 2 (3.33%)
+Reads discarded because len(SEQ) neq len(QUAL): 2
+Blank lines: 12 (20.0%)
diff --git a/tests/testdata/summary1.log b/tests/testdata/summary1.log
@@ -0,0 +1,11 @@
+FASTQWIPER SUMMARY:
+
+Total lines: 30
+Well-formed lines: 8 (26.67%)
+Clean reads: 2
+Bad headers or misplaced lines: 5 (16.67%) of which 2 fixed
+BAD SEQ lines: 1 (3.33%)
+BAD '+' lines: 1 (3.33%)
+BAD QUAL lines: 1 (3.33%)
+Reads discarded because len(SEQ) neq len(QUAL): 1
+Blank lines: 6 (20.0%)
diff --git a/tests/testdata/summary2.log b/tests/testdata/summary2.log
@@ -0,0 +1,11 @@
+FASTQWIPER SUMMARY:
+
+Total lines: 12
+Well-formed lines: 2 (16.67%)
+Clean reads: 5
+Bad headers or misplaced lines: 1 (8.33%) of which 0 fixed
+BAD SEQ lines: 2 (16.67%)
+BAD '+' lines: 3 (25%)
+BAD QUAL lines: 4 (33.33%)
+Reads discarded because len(SEQ) neq len(QUAL): 5
+Blank lines: 7 (58.33%)