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mashu/README.md

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Hello there!

I am a Bioinformatician at Karolinska Institutet, Stockholm, Sweden. Currently developing deep learning models in Flux/Julia for antibody sequence classification from next-generation sequencing data and germline inference. Passionate about leveraging AI to advance our understanding of adaptive immunity.

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  1. NaNTracker.jl Public

    Simple NaNTracker to test backward pass in Flux models.

    Julia

  2. SequenceTokenizers.jl Public

    Character level tokenizers for sequence data

    Julia 1

  3. IgBLAST.jl Public

    A Julia package for running IgBLAST analyses on immunoglobulin (Ig) and T cell receptor (TCR) sequences.

    Julia 3

  4. MultiresNet.jl Public

    Julia implementation of "Sequence Modeling with Multiresolution Convolutional Memory" by Jiaxin Shi et al. (2023)

    Julia 1

  5. PositionalEmbeddings.jl Public

    Positional embeddings for enriching sequence data with positional information

    Julia 9 1

  6. ESM.jl Public

    Julia implementation of ESM Cambrian https://www.evolutionaryscale.ai/blog/esm-cambrian

    Julia 2

444 contributions in the last year

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Activity overview

Contributed to mashu/MorseTrainer, mashu/LineageCollapse.jl, mashu/SequenceTokenizers.jl and 20 other repositories
Loading A graph representing mashu's contributions from April 14, 2024 to April 15, 2025. The contributions are 90% commits, 6% issues, 3% pull requests, 1% code review.

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April 2025

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