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GFAffix strips header information #7

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glennhickey opened this issue Nov 4, 2022 · 1 comment
Closed

GFAffix strips header information #7

glennhickey opened this issue Nov 4, 2022 · 1 comment

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@glennhickey
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In vg we're using these "RS" GFA header tags to distinguish between reference and haplotype paths in W-lines. But this information is getting lost in GFAffix which apparently just writes H VG:Z:1.0 in the output no matter what. This is not an urgent issue as it's so easy to work around, but it would be nice if GFAffix would be updated to preserve the input H line as is.
@danydoerr
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That makes sense--will be fixed in the next release.

danydoerr pushed a commit that referenced this issue Aug 8, 2023
implements feature request from issue #7
f43a830
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@glennhickey @danydoerr