Binary renamed: The binary was renamed from seqtool
to st
, because
typing the rather long name repeatedly can be tiring (-: The documentation
was updated accordingly
New commands:
- view command for viewing sequences in terminal with colored background
Changes / additions:
-
Seqtool now handles quality scores associated with sequences. This includes:
- Support for converting between FASTQ format variants
- The
exp_err
statistics variable, which represents the total number of expected
errors in a sequence, according to the quality scores. This allows filtering
by sequence quality as done byfastq_filter
from USEARCH and VSEARCH - 454-style QUAL files can be read an written
-
--format
renamed to--fmt
, and--outformat
renamed to--to
-
The former
txt
format is nowtsv
(including the option--to-tsv
).
Bug fixes:
seq_io
was updated, containing two small bug fixes. Both bugs were very
unlikely to be hit and of low severity