compatibility_fix

marbl · Mar 18, 2024 · 4dff6c8 · 4dff6c8
1 parent 7238937
commit 4dff6c8
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/src/Snakefiles/3-splitONT.sm b/src/Snakefiles/3-splitONT.sm
@@ -37,7 +37,7 @@ checkpoint splitONT:
     input:
         ont            = ONT_READS if config['withONT'] == "True" else {rules.emptyfile.output}
     output:
-        split_finished = '3-align/splitONT.finished'
+        split_finished = '3-align/split/splitONT.finished'
     log:
         err            = '3-align/splitONT.err'
     params:

diff --git a/src/verkko.sh b/src/verkko.sh
@@ -771,6 +771,8 @@ echo >> ${outd}/snakemake.sh "  --configfile verkko.yml \\"
 echo >> ${outd}/snakemake.sh "  --reason \\"
 echo >> ${outd}/snakemake.sh "  --keep-going \\"
 echo >> ${outd}/snakemake.sh "  --rerun-incomplete \\"
+echo >> ${outd}/snakemake.sh "  --rerun-triggers mtime \\"
+
 if [ $grid = "local" ] ; then
     echo >> ${outd}/snakemake.sh "  --latency-wait 2 \\"
     echo >> ${outd}/snakemake.sh "  --cores ${local_cpus} \\"