fix(pandoc.yml): Update pandoc and pandoc-crossref

.github/workflows/pandoc.yml

@@ -9,9 +9,10 @@ jobs:
       - uses: actions/checkout@v3
       - name: install pandoc and pandoc-crossref
         run: |
-          wget https://github.com/jgm/pandoc/releases/download/2.19.2/pandoc-2.19.2-1-amd64.deb
-          sudo dpkg -i pandoc-2.19.2-1-amd64.deb
-          wget https://github.com/lierdakil/pandoc-crossref/releases/download/v0.3.13.0b/pandoc-crossref-Linux.tar.xz
+          wget https://github.com/jgm/pandoc/releases/download/3.0.1/pandoc-3.0.1-1-amd64.deb
+          sudo dpkg -i pandoc-3.0.1-1-amd64.deb
+          rm pandoc-3.0.1-1-amd64.deb
+          wget https://github.com/lierdakil/pandoc-crossref/releases/download/v0.3.15.0/pandoc-crossref-Linux.tar.xz
           tar -xvf pandoc-crossref-Linux.tar.xz
           sudo mv pandoc-crossref /usr/bin
       - uses: actions/cache@v3

README.md

@@ -9,7 +9,6 @@
 [![DOI](https://zenodo.org/badge/139726344.svg)](https://zenodo.org/badge/latestdoi/139726344)
 
 <!-- prettier-ignore -->
-
 | from md | [article/article.md](article/article.md)[article/article.md](article/article.md) | [presentation/presentation.md](presentation/presentation.md) | [thesis/00.md](thesis/00.md) |
 |---|-----|-----|-----|
 | | [![](assets/images/article.png)](article/article.md) | [![](assets/images/presentation.png)](presentation/presentation.md) | [![](assets/images/thesis.png)](thesis/00.md) |

article/article.tex

@@ -5,17 +5,20 @@
 \documentclass[
   ]{scrartcl}
 \usepackage{amsmath,amssymb}
-\usepackage{lmodern}
 \usepackage{iftex}
 \ifPDFTeX
   \usepackage[T1]{fontenc}
   \usepackage[utf8]{inputenc}
   \usepackage{textcomp} % provide euro and other symbols
 \else % if luatex or xetex
-  \usepackage{unicode-math}
+  \usepackage{unicode-math} % this also loads fontspec
   \defaultfontfeatures{Scale=MatchLowercase}
   \defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1}
 \fi
+\usepackage{lmodern}
+\ifPDFTeX\else
+  % xetex/luatex font selection
+\fi
 % Use upquote if available, for straight quotes in verbatim environments
 \IfFileExists{upquote.sty}{\usepackage{upquote}}{}
 \IfFileExists{microtype.sty}{% use microtype if available
@@ -94,7 +97,7 @@
 \makeatletter
 \def\fps@figure{htbp}
 \makeatother
-\usepackage[normalem]{ulem}
+\usepackage{soul}
 \setlength{\emergencystretch}{3em} % prevent overfull lines
 \providecommand{\tightlist}{%
   \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
@@ -147,7 +150,7 @@
 \fi
 \IfFileExists{bookmark.sty}{\usepackage{bookmark}}{\usepackage{hyperref}}
 \IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available
-\urlstyle{same} % disable monospaced font for URLs
+\urlstyle{same}
 \hypersetup{
   pdftitle={Title},
   pdfauthor={Eleanor Roosevelt; John Peters Humphrey},
@@ -244,8 +247,8 @@ \subsection{Bold and italic}\label{bold-and-italic}}
 \hypertarget{struck-through}{%
 \subsection{Struck through}\label{struck-through}}
 
-\sout{All human beings are born free and equal in dignity and rights.}
-All human beings are born free and equal in dignity and rights.All human
+\st{All human beings are born free and equal in dignity and rights.} All
+human beings are born free and equal in dignity and rights.All human
 beings are born free and equal in dignity and rights.All human beings
 are born free and equal in dignity and rights.
 
@@ -370,22 +373,24 @@ \subsection{Tables}\label{tables}}
   >{\raggedright\arraybackslash}p{(\columnwidth - 2\tabcolsep) * \real{0.5000}}
   >{\raggedright\arraybackslash}p{(\columnwidth - 2\tabcolsep) * \real{0.5000}}@{}}
 \caption{Table caption}\tabularnewline
-\toprule()
+\toprule\noalign{}
 \begin{minipage}[b]{\linewidth}\raggedright
 column 1
 \end{minipage} & \begin{minipage}[b]{\linewidth}\raggedright
 column 2
 \end{minipage} \\
-\midrule()
+\midrule\noalign{}
 \endfirsthead
-\toprule()
+\toprule\noalign{}
 \begin{minipage}[b]{\linewidth}\raggedright
 column 1
 \end{minipage} & \begin{minipage}[b]{\linewidth}\raggedright
 column 2
 \end{minipage} \\
-\midrule()
+\midrule\noalign{}
 \endhead
+\bottomrule\noalign{}
+\endlastfoot
 All human beings are born free and equal in dignity and rights. & All
 human beings are born free and equal in dignity and rights. \\
 All human beings are born free and equal in dignity and rights. & All
@@ -394,7 +399,6 @@ \subsection{Tables}\label{tables}}
 human beings are born free and equal in dignity and rights. \\
 All human beings are born free and equal in dignity and rights. & All
 human beings are born free and equal in dignity and rights. \\
-\bottomrule()
 \end{longtable}
 
 All human beings are born free and equal in dignity and rights. All

presentation/presentation.tex

@@ -5,17 +5,20 @@
 \documentclass[
 ]{beamer}
 \usepackage{amsmath,amssymb}
-\usepackage{lmodern}
 \usepackage{iftex}
 \ifPDFTeX
   \usepackage[T1]{fontenc}
   \usepackage[utf8]{inputenc}
   \usepackage{textcomp} % provide euro and other symbols
 \else % if luatex or xetex
-  \usepackage{unicode-math}
+  \usepackage{unicode-math} % this also loads fontspec
   \defaultfontfeatures{Scale=MatchLowercase}
   \defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1}
 \fi
+\usepackage{lmodern}
+\ifPDFTeX\else
+  % xetex/luatex font selection
+\fi
 % Use upquote if available, for straight quotes in verbatim environments
 \IfFileExists{upquote.sty}{\usepackage{upquote}}{}
 \IfFileExists{microtype.sty}{% use microtype if available
@@ -94,7 +97,7 @@
 \makeatletter
 \def\fps@figure{htbp}
 \makeatother
-\usepackage[normalem]{ulem}
+\usepackage{soul}
 \setlength{\emergencystretch}{3em} % prevent overfull lines
 \providecommand{\tightlist}{%
   \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
@@ -137,7 +140,7 @@
 \fi
 \IfFileExists{bookmark.sty}{\usepackage{bookmark}}{\usepackage{hyperref}}
 \IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available
-\urlstyle{same} % disable monospaced font for URLs
+\urlstyle{same}
 \hypersetup{
   pdftitle={Title},
   pdfauthor={Eleanor Roosevelt; John Peters Humphrey},
@@ -224,8 +227,8 @@ \subsection{Bold and italic}\label{bold-and-italic}}
 \hypertarget{struck-through}{%
 \subsection{Struck through}\label{struck-through}}
 
-\sout{All human beings are born free and equal in dignity and rights.}
-All human beings are born free and equal in dignity and rights.All human
+\st{All human beings are born free and equal in dignity and rights.} All
+human beings are born free and equal in dignity and rights.All human
 beings are born free and equal in dignity and rights.All human beings
 are born free and equal in dignity and rights.
 
@@ -320,22 +323,24 @@ \subsection{Tables}\label{tables}}
   >{\raggedright\arraybackslash}p{(\columnwidth - 2\tabcolsep) * \real{0.5000}}
   >{\raggedright\arraybackslash}p{(\columnwidth - 2\tabcolsep) * \real{0.5000}}@{}}
 \caption{Table caption}\tabularnewline
-\toprule()
+\toprule\noalign{}
 \begin{minipage}[b]{\linewidth}\raggedright
 column 1
 \end{minipage} & \begin{minipage}[b]{\linewidth}\raggedright
 column 2
 \end{minipage} \\
-\midrule()
+\midrule\noalign{}
 \endfirsthead
-\toprule()
+\toprule\noalign{}
 \begin{minipage}[b]{\linewidth}\raggedright
 column 1
 \end{minipage} & \begin{minipage}[b]{\linewidth}\raggedright
 column 2
 \end{minipage} \\
-\midrule()
+\midrule\noalign{}
 \endhead
+\bottomrule\noalign{}
+\endlastfoot
 All human beings are born free and equal in dignity and rights. & All
 human beings are born free and equal in dignity and rights. \\
 All human beings are born free and equal in dignity and rights. & All
@@ -344,7 +349,6 @@ \subsection{Tables}\label{tables}}
 human beings are born free and equal in dignity and rights. \\
 All human beings are born free and equal in dignity and rights. & All
 human beings are born free and equal in dignity and rights. \\
-\bottomrule()
 \end{longtable}
 
 \hypertarget{footnotes}{%
@@ -505,13 +509,14 @@ \subsection{Two columns: image and
 \includegraphics[width=\textwidth,height=0.5\textheight]{images/Eleanor_Roosevelt_and_Human_Rights_Declaration.jpeg}
 
 \begin{longtable}[]{@{}lc@{}}
-\toprule()
+\toprule\noalign{}
 \textbf{Item} & \textbf{Option} \\
-\midrule()
+\midrule\noalign{}
 \endhead
+\bottomrule\noalign{}
+\endlastfoot
 Item 1 & Option 1 \\
 Item 2 & Option 2 \\
-\bottomrule()
 \end{longtable}
 
 \hypertarget{bibliography}{%

thesis/00.md

@@ -50,7 +50,7 @@ header-includes:
     ```{=latex}
     % titlepage
     \subject{DISS. Nr. 1111\\~\\~\\}
-    \publishers{A thesis submitted to attain the degree o\\DOCTOR OF SCIENCES\\(Dr. sc.)\\~\\~\\presented by\\~\\Eleanor Roosevelt\\MA, University of Example\\born on 11.10.1884\\~\\~\\accepted on the recommendation of \\~\\Prof. Dr. Anna Hall Roosevelt\\Prof. Dr. Elliott Roosevelt\\~\\2022}
+    \publishers{A thesis submitted to attain the degree of\\DOCTOR OF SCIENCES\\(Dr. sc.)\\~\\~\\presented by\\~\\Eleanor Roosevelt\\MA, University of Example\\born on 11.10.1884\\~\\~\\accepted on the recommendation of \\~\\Prof. Dr. Anna Hall Roosevelt\\Prof. Dr. Elliott Roosevelt\\~\\2022}
     \uppertitleback{Title}
     \lowertitleback{\emph{Eleanor Roosevelt} is Fellow at the University of Example.}
     \dedication{\emph{For all humants of this world}}

thesis/00_Introduction.md

@@ -111,11 +111,7 @@ All human beings are born free and equal in dignity and rights. All human beings
 
 ## Equations
 
-$$
-x^2 + y^2 = z^2
-$$
-
-{#eq:pythagoras}
+$$x^2 + y^2 = z^2$${#eq:pythagoras}
 
 ## Cross-references
 

thesis/thesis.tex

@@ -10,18 +10,21 @@
   toc=listof,
   listof=nochaptergap]{scrbook}
 \usepackage{amsmath,amssymb}
-\usepackage{lmodern}
 \usepackage{setspace}
 \usepackage{iftex}
 \ifPDFTeX
   \usepackage[T1]{fontenc}
   \usepackage[utf8]{inputenc}
   \usepackage{textcomp} % provide euro and other symbols
 \else % if luatex or xetex
-  \usepackage{unicode-math}
+  \usepackage{unicode-math} % this also loads fontspec
   \defaultfontfeatures{Scale=MatchLowercase}
   \defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1}
 \fi
+\usepackage{lmodern}
+\ifPDFTeX\else
+  % xetex/luatex font selection
+\fi
 % Use upquote if available, for straight quotes in verbatim environments
 \IfFileExists{upquote.sty}{\usepackage{upquote}}{}
 \IfFileExists{microtype.sty}{% use microtype if available
@@ -101,7 +104,7 @@
 \makeatletter
 \def\fps@figure{htbp}
 \makeatother
-\usepackage[normalem]{ulem}
+\usepackage{soul}
 \setlength{\emergencystretch}{3em} % prevent overfull lines
 \providecommand{\tightlist}{%
   \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
@@ -149,7 +152,7 @@
 }%
 % titlepage
 \subject{DISS. Nr. 1111\\~\\~\\}
-\publishers{A thesis submitted to attain the degree o\\DOCTOR OF SCIENCES\\(Dr. sc.)\\~\\~\\presented by\\~\\Eleanor Roosevelt\\MA, University of Example\\born on 11.10.1884\\~\\~\\accepted on the recommendation of \\~\\Prof. Dr. Anna Hall Roosevelt\\Prof. Dr. Elliott Roosevelt\\~\\2022}
+\publishers{A thesis submitted to attain the degree of\\DOCTOR OF SCIENCES\\(Dr. sc.)\\~\\~\\presented by\\~\\Eleanor Roosevelt\\MA, University of Example\\born on 11.10.1884\\~\\~\\accepted on the recommendation of \\~\\Prof. Dr. Anna Hall Roosevelt\\Prof. Dr. Elliott Roosevelt\\~\\2022}
 \uppertitleback{Title}
 \lowertitleback{\emph{Eleanor Roosevelt} is Fellow at the University of Example.}
 \dedication{\emph{For all humants of this world}}
@@ -199,7 +202,7 @@
 \fi
 \IfFileExists{bookmark.sty}{\usepackage{bookmark}}{\usepackage{hyperref}}
 \IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available
-\urlstyle{same} % disable monospaced font for URLs
+\urlstyle{same}
 \hypersetup{
   pdftitle={Title},
   pdfauthor={\href{eleanor.eoosevelt@domain.com}{Eleanor Roosevelt}},
@@ -305,10 +308,10 @@ \section{Bold and italic}\label{bold-and-italic}}
 \hypertarget{struck-through}{%
 \section{Struck through}\label{struck-through}}
 
-\sout{All human beings are born free and equal in dignity and rights.}
-All human beings are born free and equal in dignity and rights. All
+\st{All human beings are born free and equal in dignity and rights.} All
 human beings are born free and equal in dignity and rights. All human
-beings are born free and equal in dignity and rights.
+beings are born free and equal in dignity and rights. All human beings
+are born free and equal in dignity and rights.
 
 \hypertarget{numbered-lists}{%
 \section{Numbered lists}\label{numbered-lists}}
@@ -434,22 +437,24 @@ \section{Tables}\label{tables}}
   >{\raggedright\arraybackslash}p{(\columnwidth - 2\tabcolsep) * \real{0.5000}}
   >{\raggedright\arraybackslash}p{(\columnwidth - 2\tabcolsep) * \real{0.5000}}@{}}
 \caption{\label{tbl:example_tbl}Table caption}\tabularnewline
-\toprule()
+\toprule\noalign{}
 \begin{minipage}[b]{\linewidth}\raggedright
 column 1
 \end{minipage} & \begin{minipage}[b]{\linewidth}\raggedright
 column 2
 \end{minipage} \\
-\midrule()
+\midrule\noalign{}
 \endfirsthead
-\toprule()
+\toprule\noalign{}
 \begin{minipage}[b]{\linewidth}\raggedright
 column 1
 \end{minipage} & \begin{minipage}[b]{\linewidth}\raggedright
 column 2
 \end{minipage} \\
-\midrule()
+\midrule\noalign{}
 \endhead
+\bottomrule\noalign{}
+\endlastfoot
 All human beings are born free and equal in dignity and rights. & All
 human beings are born free and equal in dignity and rights. \\
 All human beings are born free and equal in dignity and rights. & All
@@ -458,7 +463,6 @@ \section{Tables}\label{tables}}
 human beings are born free and equal in dignity and rights. \\
 All human beings are born free and equal in dignity and rights. & All
 human beings are born free and equal in dignity and rights. \\
-\bottomrule()
 \end{longtable}
 
 All human beings are born free and equal in dignity and rights. All
@@ -509,11 +513,7 @@ \section{Scientific citations}\label{scientific-citations}}
 \hypertarget{equations}{%
 \section{Equations}\label{equations}}
 
-\[
-x^2 + y^2 = z^2
-\]
-
-\{\#eq:pythagoras\}
+\begin{equation}\protect\hypertarget{eq:pythagoras}{}{x^2 + y^2 = z^2}\label{eq:pythagoras}\end{equation}
 
 \hypertarget{cross-references}{%
 \section{Cross-references}\label{cross-references}}