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mackerell-lab

Our lab's coding home for sharing and distributing scripts/projects.

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The MacKerell Group

Welcome to the MacKerell Group Github. If you are a collaborator, please browse through and feel free to reach out to Alex or Anmol for any access to repositories.

Important Links

Home Website: https://mackerell.umaryland.edu

Recent Papers: “Deep Neural Network Model to Predict the Electrostatic Parameters in the Polarizable Classical Drude Oscillator Force Field” https://pubs.acs.org/doi/10.1021/acs.jctc.1c01166

“SILCS-RNA: Toward a Structure-Based Drug Design Approach for Targeting RNAs with Small Molecules” https://pubs.acs.org/doi/10.1021/acs.jctc.2c00381

“In silico identification of a β2-adrenoceptor allosteric site that selectively augments canonical β2AR-Gs signaling and function” https://www.pnas.org/doi/10.1073/pnas.2214024119

Current Roster

Name Email Title Degree
Dr. Alexander MacKerell Jr. alex@outerbanks.umaryland.edu Professor Ph.D. Biochemistry, Rutgers University
Dr. Wenbo Yu wenbo@outerbanks.umaryland.edu Research Assistant Professor Ph.D. Condensed Matter Physics, Hefei National Laboratory for Physical Sciences at the Microscale
Dr. Anmol Kumar anmol@outerbanks.umaryland.edu Post-Doc Ph.D. Computational Chemistry, IIT Kanpur, India
Dr. Mingtian Zhao zhaomt@outerbanks.umaryland.edu Post-Doc Ph.D. Condensed Matter Physics, Nankai University
Dr. Asuka Orr asukaorr@outerbanks.umaryland.edu Post-Doc Ph.D. Chemical Engineering, Texas A & M University
Dr. Anastasia Croitoru anac@outerbanks.umaryland.edu Post-Doc Ph.D. Development of Force Field Methods, CNRS - Ecole Polytechnique
Dr. Yingling Nan ynan@outerbanks.umaryland.edu Post-Doc Ph.D. Civil and Environmental Engineering, University of Alberta
Dr. Prabin Baral pbaral@outerbanks.umaryland.edu Post-Doc Ph.D. Computational Biophysics, Florida International University
Dr. Erik Nordquist enord@outerbanks.umaryland.edu Post-Doc Ph.D. Computational Biophysics, University of Massachusetts Amherst
Suliman Sharif sulstice@outerbanks.umaryland.edu Graduate Student MSc. Organic Chemistry

Our Lab:

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  1. SILCS-MC-Chem-Sci-2021 SILCS-MC-Chem-Sci-2021 Public

    2

  2. Open-Source-Data-Template Open-Source-Data-Template Public

    A template for open sourcing your data a long with your paper.

    2 2

Repositories

Showing 10 of 30 repositories
  • charmm36-force-field Public

    CHARMM36 additive force field in a tarred gzipped file.

    mackerell-lab/charmm36-force-field’s past year of commit activity
    0 MIT 0 0 0 Updated Feb 19, 2025
  • pyGCMC Public
    mackerell-lab/pyGCMC’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 26, 2025
  • mackerell-lab/silcs-kinetics’s past year of commit activity
    1 BSD-3-Clause 0 0 0 Updated Jan 18, 2025
  • cgenff5 Public

    Data and scripts for CGenFF 5.0 paper

    mackerell-lab/cgenff5’s past year of commit activity
    Rich Text Format 0 0 0 0 Updated Jan 7, 2025
  • mackerell-lab/Molecular-Interaction-Rules’s past year of commit activity
    Python 1 0 0 0 Updated Jan 2, 2025
  • silcs-pathway Public
    mackerell-lab/silcs-pathway’s past year of commit activity
    2 BSD-3-Clause 0 0 0 Updated Dec 20, 2024
  • mackerell-lab/NBFIX_NBTHOLE_test’s past year of commit activity
    Python 0 0 0 0 Updated Nov 23, 2024
  • polli-solubility Public

    Drug solubility differential equation solvers

    mackerell-lab/polli-solubility’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 22, 2024
  • mackerell-lab/Paper_Ion_Protein_Nucleic-Acids’s past year of commit activity
    C 0 0 0 0 Updated Nov 16, 2024
  • Coordinate-Conversion-Tool-For-Alex Public

    A coordinate tool app for alex

    mackerell-lab/Coordinate-Conversion-Tool-For-Alex’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Aug 28, 2024

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